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The map label for this gene is fliR [H]

Identifier: 157959921

GI number: 157959921

Start: 99901

End: 100680

Strand: Direct

Name: fliR [H]

Synonym: Spea_0091

Alternate gene names: 157959921

Gene position: 99901-100680 (Clockwise)

Preceding gene: 157959920

Following gene: 157959922

Centisome position: 1.93

GC content: 46.92

Gene sequence:

>780_bases
ATGCTGTCTCTTACCTCTACCGAACTGAGTACTTTTATTGGCACCTTTTGGTGGCCATTTTGCCGAATTATGGGGGCCTT
TATGGTCATGCCATTTTTAAGCAGCACCTATATCCCAGTTACGGTACGAATTTTACTCGCATTAACATTATCGGCGCTGA
TAGCACCGATGTTACCACCATTACCAGAAGTTGATGCAATCTCGATACAGGCACTTTTACTCGCCATTGAGCAGCTGCTG
GTAGGGTTTATGATGGCGCTATTTCTCACCATTATGCTCTATGTCATGACGCAGCTAGGTGAGATGCTATCTATGCAGAT
GGGTCTGGCGATGGCGGTGATGAACGACCCCTCTAGTGGTGGCTCACACCCTATTCTTGGTCAATGGTTCCTGCTCTATG
GCACCTTGGTATTCTTAGTGCTTGATGGGCACTTAGTGGCGATTGGTGTGCTGGTCGATAGCTTTAGATTATGGCCTGTG
GGTATGGGCGTGTTTGACCTACCGCTAATGGGGCTAATCGGTCGTATTAGCTGGCTATTTGCTGTTTCGTTTATGCTTGC
TATCCCTTCTATCCTTGCCATGTTAATGGTCAACATTACCTTCGGTGTCTTGAGCCGTTCGGCGCCATCACTAAACGTTT
TTGCTCTGGGCTTCCCGATGTCAATGTTGATGGGGTTGCTATGTGTTTTCTTTTCATTCAGTGGCTTACCCAGTCGCTAT
AGTGATCTCTGTTTAGACGCCTTGTCTGCCATGTATCAGTTTATTGGGGGGATAACATGA

Upstream 100 bases:

>100_bases
CATTCCTCACCTGATAGGCTGAGACAATTGCGTAATTTGAATAAGATTGTCGCTGACAAAGTCCAAGCTAATAGCTATTC
AAACTTTAATGGTTAGCTAA

Downstream 100 bases:

>100_bases
GTAAAGATACTGGCCAGAGTAAAACGGAAGATGCAACACCCAAGAAGCTTAAACAAGCCCGTGAGCAGGGGCAGGTGCCT
CGCTCGAAAGATTTCACTTC

Product: flagellar biosynthetic protein FliR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 259; Mature: 259

Protein sequence:

>259_residues
MLSLTSTELSTFIGTFWWPFCRIMGAFMVMPFLSSTYIPVTVRILLALTLSALIAPMLPPLPEVDAISIQALLLAIEQLL
VGFMMALFLTIMLYVMTQLGEMLSMQMGLAMAVMNDPSSGGSHPILGQWFLLYGTLVFLVLDGHLVAIGVLVDSFRLWPV
GMGVFDLPLMGLIGRISWLFAVSFMLAIPSILAMLMVNITFGVLSRSAPSLNVFALGFPMSMLMGLLCVFFSFSGLPSRY
SDLCLDALSAMYQFIGGIT

Sequences:

>Translated_259_residues
MLSLTSTELSTFIGTFWWPFCRIMGAFMVMPFLSSTYIPVTVRILLALTLSALIAPMLPPLPEVDAISIQALLLAIEQLL
VGFMMALFLTIMLYVMTQLGEMLSMQMGLAMAVMNDPSSGGSHPILGQWFLLYGTLVFLVLDGHLVAIGVLVDSFRLWPV
GMGVFDLPLMGLIGRISWLFAVSFMLAIPSILAMLMVNITFGVLSRSAPSLNVFALGFPMSMLMGLLCVFFSFSGLPSRY
SDLCLDALSAMYQFIGGIT
>Mature_259_residues
MLSLTSTELSTFIGTFWWPFCRIMGAFMVMPFLSSTYIPVTVRILLALTLSALIAPMLPPLPEVDAISIQALLLAIEQLL
VGFMMALFLTIMLYVMTQLGEMLSMQMGLAMAVMNDPSSGGSHPILGQWFLLYGTLVFLVLDGHLVAIGVLVDSFRLWPV
GMGVFDLPLMGLIGRISWLFAVSFMLAIPSILAMLMVNITFGVLSRSAPSLNVFALGFPMSMLMGLLCVFFSFSGLPSRY
SDLCLDALSAMYQFIGGIT

Specific function: Role in flagellar biosynthesis [H]

COG id: COG1684

COG function: function code NU; Flagellar biosynthesis pathway, component FliR

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential). Bacterial flagellum basal body [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fliR/mopE/spaR family [H]

Homologues:

Organism=Escherichia coli, GI1788261, Length=227, Percent_Identity=32.5991189427313, Blast_Score=99, Evalue=2e-22,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006303
- InterPro:   IPR002010 [H]

Pfam domain/function: PF01311 Bac_export_1 [H]

EC number: NA

Molecular weight: Translated: 28270; Mature: 28270

Theoretical pI: Translated: 4.43; Mature: 4.43

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
8.9 %Met     (Translated Protein)
10.0 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
8.9 %Met     (Mature Protein)
10.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLSLTSTELSTFIGTFWWPFCRIMGAFMVMPFLSSTYIPVTVRILLALTLSALIAPMLPP
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCC
LPEVDAISIQALLLAIEQLLVGFMMALFLTIMLYVMTQLGEMLSMQMGLAMAVMNDPSSG
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
GSHPILGQWFLLYGTLVFLVLDGHLVAIGVLVDSFRLWPVGMGVFDLPLMGLIGRISWLF
CCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
AVSFMLAIPSILAMLMVNITFGVLSRSAPSLNVFALGFPMSMLMGLLCVFFSFSGLPSRY
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCCHHH
SDLCLDALSAMYQFIGGIT
HHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MLSLTSTELSTFIGTFWWPFCRIMGAFMVMPFLSSTYIPVTVRILLALTLSALIAPMLPP
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCC
LPEVDAISIQALLLAIEQLLVGFMMALFLTIMLYVMTQLGEMLSMQMGLAMAVMNDPSSG
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
GSHPILGQWFLLYGTLVFLVLDGHLVAIGVLVDSFRLWPVGMGVFDLPLMGLIGRISWLF
CCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
AVSFMLAIPSILAMLMVNITFGVLSRSAPSLNVFALGFPMSMLMGLLCVFFSFSGLPSRY
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCCHHH
SDLCLDALSAMYQFIGGIT
HHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8412685; 7934865 [H]