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The map label for this gene is lafU [H]

Identifier: 157959885

GI number: 157959885

Start: 69530

End: 70540

Strand: Reverse

Name: lafU [H]

Synonym: Spea_0055

Alternate gene names: 157959885

Gene position: 70540-69530 (Counterclockwise)

Preceding gene: 157959886

Following gene: 157959884

Centisome position: 1.36

GC content: 45.5

Gene sequence:

>1011_bases
ATGGCGATTAGACCTGAGCCCATAATCATAAAACGTAAAAGGCGGGGGAAACCACGCAAGGGCCATGCCGGGGCATGGAA
AGTGGCTTTTGCCGATTTCACCTTGGCCATGATGGCTTTTTTCATGGTGTTATGGATTATACAAATAGCCGATCAGCAAG
AACGCACCGTGATAGCTAAGCACATACAAGGTGACTTATTTGAAGCAGGTTCTATCAACCCGTTTGATTTGAGCAGCTCT
CCTTCAATGCTCGATTTTGAAGGACAGATGACCATTCAAGAACCAGTGCTCCCCACCTCTTCTAGTGGCGCTGGTACCCG
AGGACCTGCGCTACATAATCGCATACCTGAAGGGGAAAATAATGCAAAGGCAGGTAAAGGCCCTGAACTTAACGCTATGC
TCCCCGGTAAATTTGAAACTCAGGCTCAATTAGAGGTGCTGGCAAGAGAAATAGACAGAGTCATCGAAGATGTCAGCATG
AGCGCTAACGTCAAGCTACAGGTGGTACCACAAGGTGTGCGAATACTGATGCACGACAATATTAACAAGTTCATGTTCAC
TCGTGGCAGCTCAGAAATGAAGCCTTACTTTGAAGATCTGTTAATGGCATTAGGACCGGTACTCAGTAAAGTCGAAAACA
AAATGAGTATTTCAGGCCATACCGACTCCACTCCTTTTATTGGAAAAACGTTTACCAATTGGGAGCTATCGAGTAAACGC
GCTTTACTCGCTAGACGAGTACTCGGATACGCCGGAGTCAAAAATAATCAAGTACTCCAAGTAACAGGCATGGCGGATCA
GGCCCCGTATATTAGTCATGATCCAGCAGCTGCAGCTAATAGACGTATTGAGATGATAATTATGACTACTGATGCAGAAA
TGCAACTACGTCAAATGACAGGATTACCAGAAGAAAGTATTGCCCCCAGTAAAGCGGTTACAGACGCGAAAAAAATTGCA
GAAGCGAATCAACCTAGATCGAGATACCCAGAGTCGTGGACAAACCAATAG

Upstream 100 bases:

>100_bases
CGCCTATGATAGCTATCGATGCAGGCCGTAAACAGATTCAAATAGAAAACCGTCCCTCATTTATCGAGCTCGAACGCTGG
TTAGCGGAGCAACAAAGCTA

Downstream 100 bases:

>100_bases
TTCAGCACAGTGAGTTTATTCCTGCCGACAAGGCAGCTAAAGAGAAAACCGACAGCATAGAAAGTCGACAACATATAAGA
CTGAATCTCAGACTAGATGC

Product: OmpA/MotB domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 336; Mature: 335

Protein sequence:

>336_residues
MAIRPEPIIIKRKRRGKPRKGHAGAWKVAFADFTLAMMAFFMVLWIIQIADQQERTVIAKHIQGDLFEAGSINPFDLSSS
PSMLDFEGQMTIQEPVLPTSSSGAGTRGPALHNRIPEGENNAKAGKGPELNAMLPGKFETQAQLEVLAREIDRVIEDVSM
SANVKLQVVPQGVRILMHDNINKFMFTRGSSEMKPYFEDLLMALGPVLSKVENKMSISGHTDSTPFIGKTFTNWELSSKR
ALLARRVLGYAGVKNNQVLQVTGMADQAPYISHDPAAAANRRIEMIIMTTDAEMQLRQMTGLPEESIAPSKAVTDAKKIA
EANQPRSRYPESWTNQ

Sequences:

>Translated_336_residues
MAIRPEPIIIKRKRRGKPRKGHAGAWKVAFADFTLAMMAFFMVLWIIQIADQQERTVIAKHIQGDLFEAGSINPFDLSSS
PSMLDFEGQMTIQEPVLPTSSSGAGTRGPALHNRIPEGENNAKAGKGPELNAMLPGKFETQAQLEVLAREIDRVIEDVSM
SANVKLQVVPQGVRILMHDNINKFMFTRGSSEMKPYFEDLLMALGPVLSKVENKMSISGHTDSTPFIGKTFTNWELSSKR
ALLARRVLGYAGVKNNQVLQVTGMADQAPYISHDPAAAANRRIEMIIMTTDAEMQLRQMTGLPEESIAPSKAVTDAKKIA
EANQPRSRYPESWTNQ
>Mature_335_residues
AIRPEPIIIKRKRRGKPRKGHAGAWKVAFADFTLAMMAFFMVLWIIQIADQQERTVIAKHIQGDLFEAGSINPFDLSSSP
SMLDFEGQMTIQEPVLPTSSSGAGTRGPALHNRIPEGENNAKAGKGPELNAMLPGKFETQAQLEVLAREIDRVIEDVSMS
ANVKLQVVPQGVRILMHDNINKFMFTRGSSEMKPYFEDLLMALGPVLSKVENKMSISGHTDSTPFIGKTFTNWELSSKRA
LLARRVLGYAGVKNNQVLQVTGMADQAPYISHDPAAAANRRIEMIIMTTDAEMQLRQMTGLPEESIAPSKAVTDAKKIAE
ANQPRSRYPESWTNQ

Specific function: Probable integral membrane protein required for the rotation of the flagellar motor. Might be a linker that fastens the torque-generating machinery to the cell wall [H]

COG id: COG1360

COG function: function code N; Flagellar motor protein

Gene ontology:

Cell location: Cell inner membrane; Single-pass type II membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

Organism=Escherichia coli, GI1788198, Length=294, Percent_Identity=33.3333333333333, Blast_Score=155, Evalue=4e-39,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006665 [H]

Pfam domain/function: PF00691 OmpA [H]

EC number: NA

Molecular weight: Translated: 37191; Mature: 37060

Theoretical pI: Translated: 9.78; Mature: 9.78

Prosite motif: PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
5.4 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
5.1 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAIRPEPIIIKRKRRGKPRKGHAGAWKVAFADFTLAMMAFFMVLWIIQIADQQERTVIAK
CCCCCCCEEEEHHHCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
HIQGDLFEAGSINPFDLSSSPSMLDFEGQMTIQEPVLPTSSSGAGTRGPALHNRIPEGEN
HHCCCCCCCCCCCCCCCCCCCCEEECCCCEEECCCCCCCCCCCCCCCCCHHHCCCCCCCC
NAKAGKGPELNAMLPGKFETQAQLEVLAREIDRVIEDVSMSANVKLQVVPQGVRILMHDN
CCCCCCCCCCCEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCEEEEEECC
INKFMFTRGSSEMKPYFEDLLMALGPVLSKVENKMSISGHTDSTPFIGKTFTNWELSSKR
CCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCCCCCCCCCCHHH
ALLARRVLGYAGVKNNQVLQVTGMADQAPYISHDPAAAANRRIEMIIMTTDAEMQLRQMT
HHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCHHCCCEEEEEEEECCHHHHHHHHC
GLPEESIAPSKAVTDAKKIAEANQPRSRYPESWTNQ
CCCHHHCCCCHHHHHHHHHHHCCCCHHHCCCCCCCC
>Mature Secondary Structure 
AIRPEPIIIKRKRRGKPRKGHAGAWKVAFADFTLAMMAFFMVLWIIQIADQQERTVIAK
CCCCCCEEEEHHHCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
HIQGDLFEAGSINPFDLSSSPSMLDFEGQMTIQEPVLPTSSSGAGTRGPALHNRIPEGEN
HHCCCCCCCCCCCCCCCCCCCCEEECCCCEEECCCCCCCCCCCCCCCCCHHHCCCCCCCC
NAKAGKGPELNAMLPGKFETQAQLEVLAREIDRVIEDVSMSANVKLQVVPQGVRILMHDN
CCCCCCCCCCCEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCEEEEEECC
INKFMFTRGSSEMKPYFEDLLMALGPVLSKVENKMSISGHTDSTPFIGKTFTNWELSSKR
CCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCCCCCCCCCCHHH
ALLARRVLGYAGVKNNQVLQVTGMADQAPYISHDPAAAANRRIEMIIMTTDAEMQLRQMT
HHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCHHCCCEEEEEEEECCHHHHHHHHC
GLPEESIAPSKAVTDAKKIAEANQPRSRYPESWTNQ
CCCHHHCCCCHHHHHHHHHHHCCCCHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12620739; 8501040 [H]