| Definition | Rickettsia akari str. Hartford, complete genome. |
|---|---|
| Accession | NC_009881 |
| Length | 1,231,060 |
Click here to switch to the map view.
The map label for this gene is phbC [H]
Identifier: 157826281
GI number: 157826281
Start: 1134805
End: 1136556
Strand: Reverse
Name: phbC [H]
Synonym: A1C_06330
Alternate gene names: 157826281
Gene position: 1136556-1134805 (Counterclockwise)
Preceding gene: 157826282
Following gene: 157826280
Centisome position: 92.32
GC content: 32.36
Gene sequence:
>1752_bases ATGTATAACATATCGCACGAGACGATAATTAATAATTTCAAAGAAATTGCCGATAAATATCAAGAGCTTATTTTGCATTT CATGCAAGGCAAAGGGAGTATGATCACTAGGAGCCTAATTGAAAGTGATAAAAACAGGATTATAGCTTCTTTAATGGTCG AACAATTTTGTTCAAATCCTGAAAAATTTTGTCAGATTAATATTGAATATATTGATAAGTTAAGAGAGCTTACAACGAAT AGCTTTGCAAAATTTGTCGGTAGTCCGGCAAAAGCTGTATTTTCTCCGGATAATCGAGATAAAAGATTTAAAGATTCTTC ATGGGAGGATAATGCTTATTTTGACTTTGTTAAACAATATTATTTACTATCTAGTGAGTGGCTTAAGAAGAATATAGAAC AATATGTGCTATCAAATGATCTCAAGCAACATTTAGAGTTTGTAACTAAACATTTTATTGATGCTTTTTCACCTTCAAAT TTTGCTTTTTGTAATCCAAAAGTTTTACGTAAGACGTTAGAAAGCGGCGGTCAAAATCTAGTACAGGGATTAGAAAATTT CTTAAGCGATATAAAAAGTTCAGGCGATATATTAAATATTAAAACTACTGATAAATCAGCATTTAAACTCGGTCACAATA TTGCGGCAACAAAAGGAAAAGTTATATTCCAAAATGACTTAATGCAGCTAATATGTTATGAGCCGAAAAAGAAAACTTAT CAGATTCCGATATTTATTATTCCGCCATGTATAAATAAATATTATATACTCGATTTATCTCCGCATAATTCGCTAGTATC TTTTTTGGTAGAAAATAATTTGCAAGTTTTTCTTATTTCATGGGTTAACCCTGATATATCTCTATCGGAAAAAGGCTTTG AGGATTACTTAAAAGACGGCATTTTAGCTCCTTTTGAGTATGTTAGAAATCTTGGTTTTGAGAAAATTGATTTTGTCGGC TATTGCATGGGTGGTACGTTCCTTGCTATAATCATAGCCTACTTAAAAGTAAAAAAAATAGATGCTGTTCACAGTAGCAC TTTCTTTACTACTTTGCTTGATTATACTCACCCGGGCGAGCTTGGAATATTTTTTAATGAAGCTACAATTAATTACATTA AAGAAGATATAAAGCTAAAGGGCTATTTTGATGGACAATATTTATCAAATAGTTTTAGTTTGCTAAGGGCAAATGATCTA ATTTGGACATTTTTTATCAATAATTATTTGCTTGGTGAAAAACCTATGCCTTTTGATTTGCTATATTGGAATGCGGATTC TACTAACTTGCCGGCCAAAATGTATGAGGAATATTTACACAATACATATTGTAATAACTTGCTAAAAGAGTCTAATAATT TAGAGGTACTCGGGGCAACAATAGATCTTGGAAAAGTTGATTGCAACACTTTTTTCGTAGCCGCAAAAGAAGATCATATA GCTCCATGGCGTTCAATATATGATGGAGTCAAATTATTAAACGGACATAAGATTTTTTGTCTCGCTGATTCAGGGCATGT AGCAGGTGTAGTTAATCCTCCTGCGATTGCTAAATATCATTATCGGCTTAACGATGACTTAAGTTTAAGTAGTCATGAGT GGCTTATAAAGGCTACGGAATATGAAGGCTCATGGTGGAATTATTGGCTTGATTGGCTTATAAAAAATAATGATAATAAG CTAGTAGATTCTGTAGATTATCAGAATCTAGAGGCTATTGAAGAAGCACCTGGCAGTTACGTAAGGAAGTAG
Upstream 100 bases:
>100_bases GGATGGTTTAAAGATCTAGGTTGTTCTATGTTCATTCCAGCGCGGAGACGGGAATGACATAGAGAGCCATACAAATCATA TAACATTATCAGAACTAAAC
Downstream 100 bases:
>100_bases GTGTTATTACTTCATTGTCATTCCCGCCTACGCGTGAATGACAATGTGTGTTTCTTGATCCATACACACAACGCCTAAAA TATAAATAAGTCATGAAGAG
Product: Poly(3-hydroxyalkanoate) synthetase
Products: NA
Alternate protein names: PHA synthase; PHB synthase; Poly(3-hydroxyalkanoate) polymerase; PHA polymerase; Poly(3-hydroxybutyrate) polymerase; PHB polymerase; Polyhydroxyalkanoic acid synthase [H]
Number of amino acids: Translated: 583; Mature: 583
Protein sequence:
>583_residues MYNISHETIINNFKEIADKYQELILHFMQGKGSMITRSLIESDKNRIIASLMVEQFCSNPEKFCQINIEYIDKLRELTTN SFAKFVGSPAKAVFSPDNRDKRFKDSSWEDNAYFDFVKQYYLLSSEWLKKNIEQYVLSNDLKQHLEFVTKHFIDAFSPSN FAFCNPKVLRKTLESGGQNLVQGLENFLSDIKSSGDILNIKTTDKSAFKLGHNIAATKGKVIFQNDLMQLICYEPKKKTY QIPIFIIPPCINKYYILDLSPHNSLVSFLVENNLQVFLISWVNPDISLSEKGFEDYLKDGILAPFEYVRNLGFEKIDFVG YCMGGTFLAIIIAYLKVKKIDAVHSSTFFTTLLDYTHPGELGIFFNEATINYIKEDIKLKGYFDGQYLSNSFSLLRANDL IWTFFINNYLLGEKPMPFDLLYWNADSTNLPAKMYEEYLHNTYCNNLLKESNNLEVLGATIDLGKVDCNTFFVAAKEDHI APWRSIYDGVKLLNGHKIFCLADSGHVAGVVNPPAIAKYHYRLNDDLSLSSHEWLIKATEYEGSWWNYWLDWLIKNNDNK LVDSVDYQNLEAIEEAPGSYVRK
Sequences:
>Translated_583_residues MYNISHETIINNFKEIADKYQELILHFMQGKGSMITRSLIESDKNRIIASLMVEQFCSNPEKFCQINIEYIDKLRELTTN SFAKFVGSPAKAVFSPDNRDKRFKDSSWEDNAYFDFVKQYYLLSSEWLKKNIEQYVLSNDLKQHLEFVTKHFIDAFSPSN FAFCNPKVLRKTLESGGQNLVQGLENFLSDIKSSGDILNIKTTDKSAFKLGHNIAATKGKVIFQNDLMQLICYEPKKKTY QIPIFIIPPCINKYYILDLSPHNSLVSFLVENNLQVFLISWVNPDISLSEKGFEDYLKDGILAPFEYVRNLGFEKIDFVG YCMGGTFLAIIIAYLKVKKIDAVHSSTFFTTLLDYTHPGELGIFFNEATINYIKEDIKLKGYFDGQYLSNSFSLLRANDL IWTFFINNYLLGEKPMPFDLLYWNADSTNLPAKMYEEYLHNTYCNNLLKESNNLEVLGATIDLGKVDCNTFFVAAKEDHI APWRSIYDGVKLLNGHKIFCLADSGHVAGVVNPPAIAKYHYRLNDDLSLSSHEWLIKATEYEGSWWNYWLDWLIKNNDNK LVDSVDYQNLEAIEEAPGSYVRK >Mature_583_residues MYNISHETIINNFKEIADKYQELILHFMQGKGSMITRSLIESDKNRIIASLMVEQFCSNPEKFCQINIEYIDKLRELTTN SFAKFVGSPAKAVFSPDNRDKRFKDSSWEDNAYFDFVKQYYLLSSEWLKKNIEQYVLSNDLKQHLEFVTKHFIDAFSPSN FAFCNPKVLRKTLESGGQNLVQGLENFLSDIKSSGDILNIKTTDKSAFKLGHNIAATKGKVIFQNDLMQLICYEPKKKTY QIPIFIIPPCINKYYILDLSPHNSLVSFLVENNLQVFLISWVNPDISLSEKGFEDYLKDGILAPFEYVRNLGFEKIDFVG YCMGGTFLAIIIAYLKVKKIDAVHSSTFFTTLLDYTHPGELGIFFNEATINYIKEDIKLKGYFDGQYLSNSFSLLRANDL IWTFFINNYLLGEKPMPFDLLYWNADSTNLPAKMYEEYLHNTYCNNLLKESNNLEVLGATIDLGKVDCNTFFVAAKEDHI APWRSIYDGVKLLNGHKIFCLADSGHVAGVVNPPAIAKYHYRLNDDLSLSSHEWLIKATEYEGSWWNYWLDWLIKNNDNK LVDSVDYQNLEAIEEAPGSYVRK
Specific function: Polymerizes d(-)-3-hydroxybutyryl-CoA to create PHB which consists of thousands of hydroxybutyrate molecules linked end to end. PHB serves as an intracellular energy reserve material when cells grow under conditions of nutrient limitation [H]
COG id: COG3243
COG function: function code I; Poly(3-hydroxyalkanoate) synthetase
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the PHA/PHB synthase family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000073 - InterPro: IPR010963 - InterPro: IPR010941 [H]
Pfam domain/function: PF00561 Abhydrolase_1; PF07167 PhaC_N [H]
EC number: NA
Molecular weight: Translated: 67225; Mature: 67225
Theoretical pI: Translated: 5.77; Mature: 5.77
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MYNISHETIINNFKEIADKYQELILHFMQGKGSMITRSLIESDKNRIIASLMVEQFCSNP CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC EKFCQINIEYIDKLRELTTNSFAKFVGSPAKAVFSPDNRDKRFKDSSWEDNAYFDFVKQY HHHEEEEHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCHHHHHHHHH YLLSSEWLKKNIEQYVLSNDLKQHLEFVTKHFIDAFSPSNFAFCNPKVLRKTLESGGQNL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCHHHHHHHHHHCCHHH VQGLENFLSDIKSSGDILNIKTTDKSAFKLGHNIAATKGKVIFQNDLMQLICYEPKKKTY HHHHHHHHHHHHCCCCEEEEEECCCHHHHHCCCEECCCCCEEEHHHHHHHHEECCCCCEE QIPIFIIPPCINKYYILDLSPHNSLVSFLVENNLQVFLISWVNPDISLSEKGFEDYLKDG EEEEEEECCCCCCEEEEEECCCHHHHHHHHHCCCEEEEEEECCCCCCCCCCCHHHHHHCC ILAPFEYVRNLGFEKIDFVGYCMGGTFLAIIIAYLKVKKIDAVHSSTFFTTLLDYTHPGE CCCHHHHHHHCCCCHHHHHEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC LGIFFNEATINYIKEDIKLKGYFDGQYLSNSFSLLRANDLIWTFFINNYLLGEKPMPFDL EEEEEEHHHHHHHHHCCEEEEEECCHHHCCCHHEEEECCEEEEEEECCEEECCCCCCEEE LYWNADSTNLPAKMYEEYLHNTYCNNLLKESNNLEVLGATIDLGKVDCNTFFVAAKEDHI EEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEECCEECCCEEEEEECCCCC APWRSIYDGVKLLNGHKIFCLADSGHVAGVVNPPAIAKYHYRLNDDLSLSSHEWLIKATE CHHHHHHHHHHEECCCEEEEEECCCCEEEECCCCCCEEEEEEECCCCCCCCCCEEEEEEE YEGSWWNYWLDWLIKNNDNKLVDSVDYQNLEAIEEAPGSYVRK CCCCHHHEEEEEEEECCCCCEECCCCCCHHHHHHHCCCHHCCC >Mature Secondary Structure MYNISHETIINNFKEIADKYQELILHFMQGKGSMITRSLIESDKNRIIASLMVEQFCSNP CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC EKFCQINIEYIDKLRELTTNSFAKFVGSPAKAVFSPDNRDKRFKDSSWEDNAYFDFVKQY HHHEEEEHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCHHHHHHHHH YLLSSEWLKKNIEQYVLSNDLKQHLEFVTKHFIDAFSPSNFAFCNPKVLRKTLESGGQNL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCHHHHHHHHHHCCHHH VQGLENFLSDIKSSGDILNIKTTDKSAFKLGHNIAATKGKVIFQNDLMQLICYEPKKKTY HHHHHHHHHHHHCCCCEEEEEECCCHHHHHCCCEECCCCCEEEHHHHHHHHEECCCCCEE QIPIFIIPPCINKYYILDLSPHNSLVSFLVENNLQVFLISWVNPDISLSEKGFEDYLKDG EEEEEEECCCCCCEEEEEECCCHHHHHHHHHCCCEEEEEEECCCCCCCCCCCHHHHHHCC ILAPFEYVRNLGFEKIDFVGYCMGGTFLAIIIAYLKVKKIDAVHSSTFFTTLLDYTHPGE CCCHHHHHHHCCCCHHHHHEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC LGIFFNEATINYIKEDIKLKGYFDGQYLSNSFSLLRANDLIWTFFINNYLLGEKPMPFDL EEEEEEHHHHHHHHHCCEEEEEECCHHHCCCHHEEEECCEEEEEEECCEEECCCCCCEEE LYWNADSTNLPAKMYEEYLHNTYCNNLLKESNNLEVLGATIDLGKVDCNTFFVAAKEDHI EEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEECCEECCCEEEEEECCCCC APWRSIYDGVKLLNGHKIFCLADSGHVAGVVNPPAIAKYHYRLNDDLSLSSHEWLIKATE CHHHHHHHHHHEECCCEEEEEECCCCEEEECCCCCCEEEEEEECCCCCCCCCCEEEEEEE YEGSWWNYWLDWLIKNNDNKLVDSVDYQNLEAIEEAPGSYVRK CCCCHHHEEEEEEEECCCCCEECCCCCCHHHHHHHCCCHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9748438 [H]