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The map label for this gene is xerC [H]

Identifier: 157826278

GI number: 157826278

Start: 1132386

End: 1133303

Strand: Reverse

Name: xerC [H]

Synonym: A1C_06315

Alternate gene names: 157826278

Gene position: 1133303-1132386 (Counterclockwise)

Preceding gene: 157826280

Following gene: 157826277

Centisome position: 92.06

GC content: 29.3

Gene sequence:

>918_bases
ATGTTAGATATATTAATTCAAGAATTAATAGATAAGTGGCAAAAATACCTCGTTTTGCAAAGAAATTATTCTAATTATAC
AGTAATTTCTTATAATAATGATCTTAAGAATTTCCTTGAGTTTATGAATTATTATAATTCAGAGCTTGTAACGATAAATC
ATATTAAAAACGCAGATATAAGATTAATCCGAAGTTGGCTTGCAAAACGTAACTATGATAATTTTACCACTTCTTCAATT
GCACGTGGTTTATCTGCAGTAAAAAATTTTTATAGATTTTTAGAGAAAACAACACAATTAAATAGTCATATAATTTTTTC
TATAAAATCTCCTAAAAAAACTAAATTATTACCAAAAGCTTTATCGGAGGATGATGTAGTAGTATCCCTTGAACATATTG
AAGAATACGGGAATGTTAAGTGGGTAGAACTTAGAAATAAATCCCTACTTGTTCTTATATACGCTTCAGGTCTACGTATA
TCGGAAGCATTATCAATTACGAAACTTCATCTACAAAATCTAGAATTTATAAGAATAATAGGTAAAGGTAGTAAAGAAAG
AATAATTCCGTGGTTGCCGATTGCTAAAAATTTAATTACCCAATATTTAGAAATATTGCCGTATAAGCTCGGGGATAATG
AACCGATATTTAGAGGAAAGCGTGGTAAGAAATTGCAGCCACAGGTATTTAATCGTGAATTAATTAAATTAAAGCATTTT
TATGGTTTACCGCAGCATTTAACTGCTCATTCATTTAGACATAGTTTTGCTTCACATTTGCTTGAACGTGGTGCAGAATT
ACGCTCTATTCAAGAGCTATTAGGTCATAAAAGTCTATCTACTACACAAAACTATACTAAAACAAGTATAAAGCGTTTAG
AGGCTGTATATACTACCGCATATCCAATTAAAAAATAA

Upstream 100 bases:

>100_bases
ATGTCAACGTAAACCCTCAGCTCATGCTAACATTTATAAAATTATGAGTCAATAGTTGTTAGCATTAAGCGTAATATTAA
CGATAGTTAAGTTTTTATAA

Downstream 100 bases:

>100_bases
AATTAATATTTATAATCTTCTTGCGTTAATTTTAAGGTATATATTTTTTTAAAAACCTTATAAACTATATATACTAGAGC
TAATATTGAGATATTTCTAT

Product: site-specific tyrosine recombinase XerC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 305; Mature: 305

Protein sequence:

>305_residues
MLDILIQELIDKWQKYLVLQRNYSNYTVISYNNDLKNFLEFMNYYNSELVTINHIKNADIRLIRSWLAKRNYDNFTTSSI
ARGLSAVKNFYRFLEKTTQLNSHIIFSIKSPKKTKLLPKALSEDDVVVSLEHIEEYGNVKWVELRNKSLLVLIYASGLRI
SEALSITKLHLQNLEFIRIIGKGSKERIIPWLPIAKNLITQYLEILPYKLGDNEPIFRGKRGKKLQPQVFNRELIKLKHF
YGLPQHLTAHSFRHSFASHLLERGAELRSIQELLGHKSLSTTQNYTKTSIKRLEAVYTTAYPIKK

Sequences:

>Translated_305_residues
MLDILIQELIDKWQKYLVLQRNYSNYTVISYNNDLKNFLEFMNYYNSELVTINHIKNADIRLIRSWLAKRNYDNFTTSSI
ARGLSAVKNFYRFLEKTTQLNSHIIFSIKSPKKTKLLPKALSEDDVVVSLEHIEEYGNVKWVELRNKSLLVLIYASGLRI
SEALSITKLHLQNLEFIRIIGKGSKERIIPWLPIAKNLITQYLEILPYKLGDNEPIFRGKRGKKLQPQVFNRELIKLKHF
YGLPQHLTAHSFRHSFASHLLERGAELRSIQELLGHKSLSTTQNYTKTSIKRLEAVYTTAYPIKK
>Mature_305_residues
MLDILIQELIDKWQKYLVLQRNYSNYTVISYNNDLKNFLEFMNYYNSELVTINHIKNADIRLIRSWLAKRNYDNFTTSSI
ARGLSAVKNFYRFLEKTTQLNSHIIFSIKSPKKTKLLPKALSEDDVVVSLEHIEEYGNVKWVELRNKSLLVLIYASGLRI
SEALSITKLHLQNLEFIRIIGKGSKERIIPWLPIAKNLITQYLEILPYKLGDNEPIFRGKRGKKLQPQVFNRELIKLKHF
YGLPQHLTAHSFRHSFASHLLERGAELRSIQELLGHKSLSTTQNYTKTSIKRLEAVYTTAYPIKK

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The xerC-xerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell div

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790244, Length=299, Percent_Identity=29.4314381270903, Blast_Score=144, Evalue=1e-35,
Organism=Escherichia coli, GI1789261, Length=304, Percent_Identity=32.5657894736842, Blast_Score=133, Evalue=1e-32,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109
- InterPro:   IPR004107
- InterPro:   IPR011931 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 35682; Mature: 35682

Theoretical pI: Translated: 10.35; Mature: 10.35

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
0.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
0.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLDILIQELIDKWQKYLVLQRNYSNYTVISYNNDLKNFLEFMNYYNSELVTINHIKNADI
CHHHHHHHHHHHHHHHEEHEECCCCEEEEEECCHHHHHHHHHHHHCCCEEEEECCCCCHH
RLIRSWLAKRNYDNFTTSSIARGLSAVKNFYRFLEKTTQLNSHIIFSIKSPKKTKLLPKA
HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHH
LSEDDVVVSLEHIEEYGNVKWVELRNKSLLVLIYASGLRISEALSITKLHLQNLEFIRII
CCCCCEEEEHHHHHHHCCEEEEEECCCEEEEEEEECCCCHHHHHHHHHHHHCCCEEEEEE
GKGSKERIIPWLPIAKNLITQYLEILPYKLGDNEPIFRGKRGKKLQPQVFNRELIKLKHF
CCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
YGLPQHLTAHSFRHSFASHLLERGAELRSIQELLGHKSLSTTQNYTKTSIKRLEAVYTTA
HCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCC
YPIKK
CCCCC
>Mature Secondary Structure
MLDILIQELIDKWQKYLVLQRNYSNYTVISYNNDLKNFLEFMNYYNSELVTINHIKNADI
CHHHHHHHHHHHHHHHEEHEECCCCEEEEEECCHHHHHHHHHHHHCCCEEEEECCCCCHH
RLIRSWLAKRNYDNFTTSSIARGLSAVKNFYRFLEKTTQLNSHIIFSIKSPKKTKLLPKA
HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHH
LSEDDVVVSLEHIEEYGNVKWVELRNKSLLVLIYASGLRISEALSITKLHLQNLEFIRII
CCCCCEEEEHHHHHHHCCEEEEEECCCEEEEEEEECCCCHHHHHHHHHHHHCCCEEEEEE
GKGSKERIIPWLPIAKNLITQYLEILPYKLGDNEPIFRGKRGKKLQPQVFNRELIKLKHF
CCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
YGLPQHLTAHSFRHSFASHLLERGAELRSIQELLGHKSLSTTQNYTKTSIKRLEAVYTTA
HCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCC
YPIKK
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA