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The map label for this gene is atpD [H]

Identifier: 157826257

GI number: 157826257

Start: 1111317

End: 1112738

Strand: Reverse

Name: atpD [H]

Synonym: A1C_06190

Alternate gene names: 157826257

Gene position: 1112738-1111317 (Counterclockwise)

Preceding gene: 157826258

Following gene: 157826256

Centisome position: 90.39

GC content: 41.49

Gene sequence:

>1422_bases
ATGACAAAAAATATCGGTAAAATTACTCAGATTATTTCAGCGGTGGTGGATGTAAAATTTACGAATAACGGTGAGTTACC
GGAAATTTTAAATGCTCTAGAGTGCTATAACGATAAACAAAGGATAGTGCTGGAAGTAGCCCAACATATAGGTGATGATA
CGGTGCGTTGTATTGCTATGGATTCTACTGAAGGATTAGTGCGGGGTGTAGAAGTAATGGATACCGGTAGTCCTATTTGT
ATTCCTGTAGGTACTGAGACGCTTGGGCGTATTATGAATGTTGTAGGTGAGCCGATTGATGGTAAAGGAGACATTAAAAG
CTCAAATATTTCTGCTATATATAAGTCTGCTCCTGATTTTACCAATCAGTCAACCGAGCGTAATATATTAGTAACCGGTA
TTAAAGTTGTTGATTTACTTGCTCCTTACATTAAAGGCGGTAAGATAGGATTATTCGGCGGTGCAGGTGTAGGTAAAACC
GTGTTAATTATGGAGCTTATTAATAACGTAGCTAAGGCACATGGAGGTTATACGGTATTTGCAGGAGTCGGTGAGAGAAC
TAGAGAGGGTAATGATCTTTACCATGAAATGATTGACTCGGGTGTGATTGACCTTGAGAAACCGGAAAATTCAAAAGTAG
CTCTTGTTTATGGACAAATGAACGCGCCGCCTGGAGCAAGGGCAAGAGTTGCGTTAAGCGGTCTGACCATTGCGGAAAGT
TTTAGAGATATGAATGGGGGGCAAGATGTTTTGTTTTTCGTGGATAATATTTTCCGTTTCACTCAAGCAGGTTCTGAAGT
ATCGGCGCTGCTTGGTAGGATTCCGTCAGCGGTAGGGTATCAGCCTACTCTTGCTACCGATATGGGAGAACTACAAGAGC
GTATCACCTCTACTAAGCACGGCTCAATAACTTCAGTGCAGGCTATATATGTACCGGCGGATGATTTAACTGATCCTGCT
CCTGCTACTTCTTTCGCGCATCTCGATGCTACAACGGTACTTAGCCGTCAGATAGCCGAGTTTGGAATTTATCCAGCAGT
TGACCCGTTAGATAGTAATTCTCAGGTACTTGACCCGATGATTGTCGGTGAGGAGCATTATAGCGTAGCAAGACAAGTAC
AGCAGGTTTTACAAACTTATAAATCGTTGCAGGATATCATTGCTATTTTAGGTATGGATGAGTTGTCCGAAGAAGATAAA
CTAACCGTGTCGCGTGCTAGAAAAATACAGCGTTTCTTATCACAGCCTTTTCATGTCGCCGAAGTATTTACCGGATCTGA
AGGCAAATTTGTTAATCTAGCTGATACTATCGCAGGTTTTAAAGGATTGGTAGAGGGTAAATATGATGATTTACCGGAAG
CTGCTTTTTATATGGTCGGAACTATAGACGAGGCTATTGAGAAAGCAAAGATTTTGAAGTAA

Upstream 100 bases:

>100_bases
GGCTCTGAGGCGGTGTAGATATGTGTATTATGTCATTCTCGCCTACGCGCGGGAATGACATTGGTAACTATGTAAGAACA
TTATCTTAACAGAAAAAATT

Downstream 100 bases:

>100_bases
TGTTTATGTCATTCCCACGTGGCATTGTTACGTGGACCAGTTGTCCTGTCATTGCAAGGAAAATTACAAAGTAATTGGTG
AAGCAATCCAGTAAAAATGC

Product: F0F1 ATP synthase subunit beta

Products: NA

Alternate protein names: ATP synthase F1 sector subunit beta; F-ATPase subunit beta [H]

Number of amino acids: Translated: 473; Mature: 472

Protein sequence:

>473_residues
MTKNIGKITQIISAVVDVKFTNNGELPEILNALECYNDKQRIVLEVAQHIGDDTVRCIAMDSTEGLVRGVEVMDTGSPIC
IPVGTETLGRIMNVVGEPIDGKGDIKSSNISAIYKSAPDFTNQSTERNILVTGIKVVDLLAPYIKGGKIGLFGGAGVGKT
VLIMELINNVAKAHGGYTVFAGVGERTREGNDLYHEMIDSGVIDLEKPENSKVALVYGQMNAPPGARARVALSGLTIAES
FRDMNGGQDVLFFVDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGELQERITSTKHGSITSVQAIYVPADDLTDPA
PATSFAHLDATTVLSRQIAEFGIYPAVDPLDSNSQVLDPMIVGEEHYSVARQVQQVLQTYKSLQDIIAILGMDELSEEDK
LTVSRARKIQRFLSQPFHVAEVFTGSEGKFVNLADTIAGFKGLVEGKYDDLPEAAFYMVGTIDEAIEKAKILK

Sequences:

>Translated_473_residues
MTKNIGKITQIISAVVDVKFTNNGELPEILNALECYNDKQRIVLEVAQHIGDDTVRCIAMDSTEGLVRGVEVMDTGSPIC
IPVGTETLGRIMNVVGEPIDGKGDIKSSNISAIYKSAPDFTNQSTERNILVTGIKVVDLLAPYIKGGKIGLFGGAGVGKT
VLIMELINNVAKAHGGYTVFAGVGERTREGNDLYHEMIDSGVIDLEKPENSKVALVYGQMNAPPGARARVALSGLTIAES
FRDMNGGQDVLFFVDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGELQERITSTKHGSITSVQAIYVPADDLTDPA
PATSFAHLDATTVLSRQIAEFGIYPAVDPLDSNSQVLDPMIVGEEHYSVARQVQQVLQTYKSLQDIIAILGMDELSEEDK
LTVSRARKIQRFLSQPFHVAEVFTGSEGKFVNLADTIAGFKGLVEGKYDDLPEAAFYMVGTIDEAIEKAKILK
>Mature_472_residues
TKNIGKITQIISAVVDVKFTNNGELPEILNALECYNDKQRIVLEVAQHIGDDTVRCIAMDSTEGLVRGVEVMDTGSPICI
PVGTETLGRIMNVVGEPIDGKGDIKSSNISAIYKSAPDFTNQSTERNILVTGIKVVDLLAPYIKGGKIGLFGGAGVGKTV
LIMELINNVAKAHGGYTVFAGVGERTREGNDLYHEMIDSGVIDLEKPENSKVALVYGQMNAPPGARARVALSGLTIAESF
RDMNGGQDVLFFVDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGELQERITSTKHGSITSVQAIYVPADDLTDPAP
ATSFAHLDATTVLSRQIAEFGIYPAVDPLDSNSQVLDPMIVGEEHYSVARQVQQVLQTYKSLQDIIAILGMDELSEEDKL
TVSRARKIQRFLSQPFHVAEVFTGSEGKFVNLADTIAGFKGLVEGKYDDLPEAAFYMVGTIDEAIEKAKILK

Specific function: Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits [H]

COG id: COG0055

COG function: function code C; F0F1-type ATP synthase, beta subunit

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ATPase alpha/beta chains family [H]

Homologues:

Organism=Homo sapiens, GI32189394, Length=467, Percent_Identity=76.8736616702355, Blast_Score=719, Evalue=0.0,
Organism=Homo sapiens, GI19913424, Length=307, Percent_Identity=28.3387622149837, Blast_Score=111, Evalue=1e-24,
Organism=Homo sapiens, GI19913428, Length=368, Percent_Identity=24.4565217391304, Blast_Score=92, Evalue=1e-18,
Organism=Homo sapiens, GI19913426, Length=368, Percent_Identity=24.4565217391304, Blast_Score=91, Evalue=2e-18,
Organism=Homo sapiens, GI50345984, Length=289, Percent_Identity=26.2975778546713, Blast_Score=84, Evalue=2e-16,
Organism=Homo sapiens, GI4757810, Length=289, Percent_Identity=26.2975778546713, Blast_Score=84, Evalue=2e-16,
Organism=Escherichia coli, GI1790170, Length=467, Percent_Identity=68.3083511777302, Blast_Score=645, Evalue=0.0,
Organism=Escherichia coli, GI1788251, Length=330, Percent_Identity=28.7878787878788, Blast_Score=127, Evalue=1e-30,
Organism=Escherichia coli, GI1790172, Length=326, Percent_Identity=25.1533742331288, Blast_Score=95, Evalue=1e-20,
Organism=Caenorhabditis elegans, GI25144756, Length=467, Percent_Identity=75.8029978586724, Blast_Score=715, Evalue=0.0,
Organism=Caenorhabditis elegans, GI17565854, Length=354, Percent_Identity=27.1186440677966, Blast_Score=120, Evalue=2e-27,
Organism=Caenorhabditis elegans, GI17510931, Length=362, Percent_Identity=24.3093922651934, Blast_Score=96, Evalue=4e-20,
Organism=Caenorhabditis elegans, GI17570191, Length=357, Percent_Identity=24.0896358543417, Blast_Score=92, Evalue=6e-19,
Organism=Caenorhabditis elegans, GI71988080, Length=314, Percent_Identity=24.8407643312102, Blast_Score=91, Evalue=2e-18,
Organism=Caenorhabditis elegans, GI71988063, Length=314, Percent_Identity=24.8407643312102, Blast_Score=91, Evalue=2e-18,
Organism=Caenorhabditis elegans, GI71988074, Length=266, Percent_Identity=24.812030075188, Blast_Score=74, Evalue=1e-13,
Organism=Saccharomyces cerevisiae, GI6322581, Length=461, Percent_Identity=73.9696312364425, Blast_Score=689, Evalue=0.0,
Organism=Saccharomyces cerevisiae, GI6319603, Length=396, Percent_Identity=24.7474747474747, Blast_Score=97, Evalue=6e-21,
Organism=Saccharomyces cerevisiae, GI6319370, Length=359, Percent_Identity=25.9052924791086, Blast_Score=86, Evalue=1e-17,
Organism=Saccharomyces cerevisiae, GI6320016, Length=237, Percent_Identity=26.5822784810127, Blast_Score=75, Evalue=2e-14,
Organism=Drosophila melanogaster, GI24638766, Length=467, Percent_Identity=76.6595289079229, Blast_Score=716, Evalue=0.0,
Organism=Drosophila melanogaster, GI28574560, Length=468, Percent_Identity=70.2991452991453, Blast_Score=664, Evalue=0.0,
Organism=Drosophila melanogaster, GI24638768, Length=92, Percent_Identity=67.3913043478261, Blast_Score=122, Evalue=7e-28,
Organism=Drosophila melanogaster, GI20129479, Length=304, Percent_Identity=27.3026315789474, Blast_Score=113, Evalue=3e-25,
Organism=Drosophila melanogaster, GI24583992, Length=304, Percent_Identity=26.6447368421053, Blast_Score=109, Evalue=5e-24,
Organism=Drosophila melanogaster, GI24583988, Length=301, Percent_Identity=27.5747508305648, Blast_Score=109, Evalue=5e-24,
Organism=Drosophila melanogaster, GI24583986, Length=301, Percent_Identity=27.5747508305648, Blast_Score=109, Evalue=5e-24,
Organism=Drosophila melanogaster, GI24583984, Length=301, Percent_Identity=27.5747508305648, Blast_Score=109, Evalue=5e-24,
Organism=Drosophila melanogaster, GI281361666, Length=360, Percent_Identity=24.4444444444444, Blast_Score=92, Evalue=7e-19,
Organism=Drosophila melanogaster, GI24646341, Length=360, Percent_Identity=24.4444444444444, Blast_Score=92, Evalue=7e-19,
Organism=Drosophila melanogaster, GI17136796, Length=360, Percent_Identity=24.4444444444444, Blast_Score=92, Evalue=7e-19,
Organism=Drosophila melanogaster, GI24658560, Length=314, Percent_Identity=25.4777070063694, Blast_Score=86, Evalue=7e-17,

Paralogues:

None

Copy number: 10836 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 8,000 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020003
- InterPro:   IPR000194
- InterPro:   IPR003593
- InterPro:   IPR005722
- InterPro:   IPR018118
- InterPro:   IPR000793
- InterPro:   IPR004100 [H]

Pfam domain/function: PF00006 ATP-synt_ab; PF00306 ATP-synt_ab_C; PF02874 ATP-synt_ab_N [H]

EC number: =3.6.3.14 [H]

Molecular weight: Translated: 51007; Mature: 50876

Theoretical pI: Translated: 4.58; Mature: 4.58

Prosite motif: PS00152 ATPASE_ALPHA_BETA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKNIGKITQIISAVVDVKFTNNGELPEILNALECYNDKQRIVLEVAQHIGDDTVRCIAM
CCCCHHHHHHHHHHHHEEEECCCCCHHHHHHHHHHCCCHHHHHHHHHHHCCCCCEEEEEE
DSTEGLVRGVEVMDTGSPICIPVGTETLGRIMNVVGEPIDGKGDIKSSNISAIYKSAPDF
CCCCHHHHCCCEEECCCCEEEECCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHCCCCC
TNQSTERNILVTGIKVVDLLAPYIKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYTVF
CCCCCCCCEEEEHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEE
AGVGERTREGNDLYHEMIDSGVIDLEKPENSKVALVYGQMNAPPGARARVALSGLTIAES
ECCCCCCCCCHHHHHHHHHCCCEECCCCCCCEEEEEEECCCCCCCCCEEEEECCHHHHHH
FRDMNGGQDVLFFVDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGELQERITSTKH
HHHCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHCCHHCCCCCCHHHHHHHHHHHHHCCCC
GSITSVQAIYVPADDLTDPAPATSFAHLDATTVLSRQIAEFGIYPAVDPLDSNSQVLDPM
CCCEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCE
IVGEEHYSVARQVQQVLQTYKSLQDIIAILGMDELSEEDKLTVSRARKIQRFLSQPFHVA
EECCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCHHHHHHHHHHHHHHHCCCCEEE
EVFTGSEGKFVNLADTIAGFKGLVEGKYDDLPEAAFYMVGTIDEAIEKAKILK
HEEECCCCCEEEHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
TKNIGKITQIISAVVDVKFTNNGELPEILNALECYNDKQRIVLEVAQHIGDDTVRCIAM
CCCHHHHHHHHHHHHEEEECCCCCHHHHHHHHHHCCCHHHHHHHHHHHCCCCCEEEEEE
DSTEGLVRGVEVMDTGSPICIPVGTETLGRIMNVVGEPIDGKGDIKSSNISAIYKSAPDF
CCCCHHHHCCCEEECCCCEEEECCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHCCCCC
TNQSTERNILVTGIKVVDLLAPYIKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYTVF
CCCCCCCCEEEEHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEE
AGVGERTREGNDLYHEMIDSGVIDLEKPENSKVALVYGQMNAPPGARARVALSGLTIAES
ECCCCCCCCCHHHHHHHHHCCCEECCCCCCCEEEEEEECCCCCCCCCEEEEECCHHHHHH
FRDMNGGQDVLFFVDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGELQERITSTKH
HHHCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHCCHHCCCCCCHHHHHHHHHHHHHCCCC
GSITSVQAIYVPADDLTDPAPATSFAHLDATTVLSRQIAEFGIYPAVDPLDSNSQVLDPM
CCCEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCE
IVGEEHYSVARQVQQVLQTYKSLQDIIAILGMDELSEEDKLTVSRARKIQRFLSQPFHVA
EECCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCHHHHHHHHHHHHHHHCCCCEEE
EVFTGSEGKFVNLADTIAGFKGLVEGKYDDLPEAAFYMVGTIDEAIEKAKILK
HEEECCCCCEEEHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA