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The map label for this gene is atpC

Identifier: 157826256

GI number: 157826256

Start: 1110790

End: 1111128

Strand: Reverse

Name: atpC

Synonym: A1C_06185

Alternate gene names: 157826256

Gene position: 1111128-1110790 (Counterclockwise)

Preceding gene: 157826257

Following gene: 157826255

Centisome position: 90.26

GC content: 37.76

Gene sequence:

>339_bases
ATGAACGAAACAATTTTAGTCAAAATAATTACTCCTTTAAGTATTGCATTGGAAAGGCAAGCTAAAATGGTAACAATACC
GGGTGAGGATGGTATGTTTGGTGTGCTATCGAATCACGCTACGATGATCGTTAGTTTAAAAGCCGGTTTAGTACAGGTTT
ATATAGATGATATATACAACCCACAAATTACTTATCTTGTGTCCAGCGGTGTAACCGAAGTAACGGGCAGTTATGTTAAC
ATAGCCACAGAAACGGCTATTAACGTTACGAATTTAAGTGAAGCCGAGATAGCAACCAAGCTTCAGGGGCTTCAAAAACC
TTTATCAGAACAACATTAA

Upstream 100 bases:

>100_bases
CAGTAAAAATGCTAATTTATAGCATTTTTTTTATTATTTTTCTGGATTGCCACGTTGCTTCGCTCCTCGTAATGACATAG
TAATTTTACTATATTATTCT

Downstream 100 bases:

>100_bases
TTTGTTTGAAAAATCTACGTTTTGGGATAAGATTATTGTAATAATTATTTCTAGTTTTTATGTCGTTCTCGCGGAAGCGG
GAATCCAAGATAAATCGAGC

Product: F0F1 ATP synthase subunit epsilon

Products: ADP; phosphate; H+

Alternate protein names: ATP synthase F1 sector epsilon subunit; F-ATPase epsilon subunit

Number of amino acids: Translated: 112; Mature: 112

Protein sequence:

>112_residues
MNETILVKIITPLSIALERQAKMVTIPGEDGMFGVLSNHATMIVSLKAGLVQVYIDDIYNPQITYLVSSGVTEVTGSYVN
IATETAINVTNLSEAEIATKLQGLQKPLSEQH

Sequences:

>Translated_112_residues
MNETILVKIITPLSIALERQAKMVTIPGEDGMFGVLSNHATMIVSLKAGLVQVYIDDIYNPQITYLVSSGVTEVTGSYVN
IATETAINVTNLSEAEIATKLQGLQKPLSEQH
>Mature_112_residues
MNETILVKIITPLSIALERQAKMVTIPGEDGMFGVLSNHATMIVSLKAGLVQVYIDDIYNPQITYLVSSGVTEVTGSYVN
IATETAINVTNLSEAEIATKLQGLQKPLSEQH

Specific function: Produces ATP from ADP in the presence of a proton gradient across the membrane

COG id: COG0355

COG function: function code C; F0F1-type ATP synthase, epsilon subunit (mitochondrial delta subunit)

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ATPase epsilon chain family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): ATPE_RICAH (A8GPZ3)

Other databases:

- EMBL:   CP000847
- RefSeq:   YP_001493976.1
- ProteinModelPortal:   A8GPZ3
- SMR:   A8GPZ3
- STRING:   A8GPZ3
- GeneID:   5644726
- GenomeReviews:   CP000847_GR
- KEGG:   rak:A1C_06185
- NMPDR:   fig|293614.3.peg.1166
- eggNOG:   COG0355
- HOGENOM:   HBG663981
- OMA:   YVNIATE
- ProtClustDB:   PRK01474
- BioCyc:   RAKA293614:A1C_06185-MONOMER
- HAMAP:   MF_00530
- InterPro:   IPR001469
- InterPro:   IPR020546
- Gene3D:   G3DSA:2.60.15.10
- PANTHER:   PTHR13822
- ProDom:   PD000944

Pfam domain/function: PF02823 ATP-synt_DE_N; SSF51344 ATPsynt_DE

EC number: 3.6.3.14

Molecular weight: Translated: 12104; Mature: 12104

Theoretical pI: Translated: 4.49; Mature: 4.49

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNETILVKIITPLSIALERQAKMVTIPGEDGMFGVLSNHATMIVSLKAGLVQVYIDDIYN
CCCEEEEEEECCHHEEECCCEEEEEECCCCCEEEEECCCEEEEEEECCCEEEEEECCCCC
PQITYLVSSGVTEVTGSYVNIATETAINVTNLSEAEIATKLQGLQKPLSEQH
CEEEEEEECCCCHHCCCEEEEEECCEEEECCCCHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MNETILVKIITPLSIALERQAKMVTIPGEDGMFGVLSNHATMIVSLKAGLVQVYIDDIYN
CCCEEEEEEECCHHEEECCCEEEEEECCCCCEEEEECCCEEEEEEECCCEEEEEECCCCC
PQITYLVSSGVTEVTGSYVNIATETAINVTNLSEAEIATKLQGLQKPLSEQH
CEEEEEEECCCCHHCCCEEEEEECCEEEECCCCHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; H2O; H+

Specific reaction: ATP + H2O + H+(in) = ADP + phosphate + H+(out)

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA