| Definition | Rickettsia akari str. Hartford, complete genome. |
|---|---|
| Accession | NC_009881 |
| Length | 1,231,060 |
Click here to switch to the map view.
The map label for this gene is tgt [H]
Identifier: 157826145
GI number: 157826145
Start: 997444
End: 998529
Strand: Reverse
Name: tgt [H]
Synonym: A1C_05610
Alternate gene names: 157826145
Gene position: 998529-997444 (Counterclockwise)
Preceding gene: 157826146
Following gene: 157826144
Centisome position: 81.11
GC content: 41.71
Gene sequence:
>1086_bases GTGTCAAAATTCTCATTTAATATTCATCATCAGCATAAAAAAGCTAGAAGCGGTATTATCGCAACTGCACACGGTGAAAT TCGTACTCCGGCCTTTATGCCGGTCGGGACTAGAGGAACTGTTAAGGCAATGTTGCCTGAATCGGTAGCAGAAACCGGAG CTGATATATTACTGGGTAATACTTACCACTTAATGCTTCAGCCAAGTGCCGAGCGTATAGCACGCCTTGGCGGTCTGCAT AAATTCATGAATTGGGATAAGCCGATATTAACCGATTCCGGCGGTTTTCAGGTAATGTCGCTATCGAAGTTACGGAAGAT AACCGAAGAAGGAGTAAGTTTCAGCTCTCATATTAACGGTGATAAATATATGTTAACGCCTGAGCGTTCTACCGCAATAC AATATCTGCTTGGTAGCACGATCACTATGGCTTTTGACGAATGTACGCCGTACCCTGTTACATTTGAAGAAGCTAAAACT TCTATGCAGCTTACGACTAGATGGGCGCATAGATCACGTAATGCCTTTGTTAAGCGGGAAGGCTACGCACAATTCGGTAT TATTCAAGGTAGTGTTTACGAAGAATTACGTGAGCAATCAGCTAAAGGTTTAGTAGAACTCGATTTTGATGGCTATGCTA TAGGCGGGCTTGCAGTAGGTGAGGGGCAGGAGCTGATGTTTAAAGTGCTTGATTATGCTCCGGATTTTCTGCCGCAAAAT AAGCCGCGTTATTTAATGGGAGTCGGTAAGCCTGCTGATATTATCGGTGCGGTTAACCGAGGTATAGATATGTTTGACTG CGTAATTCCGACACGCTCAGGACGTAACGGTCAGGCTTTTACAAAATACGGTACGGTAAATATCTGCAATAGCAAATACT CAGGTGATAATGAGCCGCTAGAACATGATTGTCCATGTCCTGCTTGCACTAATTACACGAAAGCTTATCTGCATCATTTA GTTAGAATCGGTGAGATACTTGGTTCTATGCTAATGACCTGGCATAATTTAACATATTTTCAAAACCTCATAAGCCGTAT TAGAGAATATATTAAACTAGGTAAAGATTTTGATTTTTATTCTTAA
Upstream 100 bases:
>100_bases ATAGAGCCGTTAGCAAAATCGCTTTAATTAGCTTTAAAATTATTTTGTTAACATTCCTATAGTATGCTAAGATATTGCTT TTAAAAACAAGTGATTATAC
Downstream 100 bases:
>100_bases TAAGCCCTTAGTTGACTCATTATAAAACGTACTTAGATATGTTATGTTATGGACAAGGTTTATGTAGATCATACTTCAGT GATTGTAGATAGACAAAAAC
Product: queuine tRNA-ribosyltransferase
Products: NA
Alternate protein names: Guanine insertion enzyme; tRNA-guanine transglycosylase [H]
Number of amino acids: Translated: 361; Mature: 360
Protein sequence:
>361_residues MSKFSFNIHHQHKKARSGIIATAHGEIRTPAFMPVGTRGTVKAMLPESVAETGADILLGNTYHLMLQPSAERIARLGGLH KFMNWDKPILTDSGGFQVMSLSKLRKITEEGVSFSSHINGDKYMLTPERSTAIQYLLGSTITMAFDECTPYPVTFEEAKT SMQLTTRWAHRSRNAFVKREGYAQFGIIQGSVYEELREQSAKGLVELDFDGYAIGGLAVGEGQELMFKVLDYAPDFLPQN KPRYLMGVGKPADIIGAVNRGIDMFDCVIPTRSGRNGQAFTKYGTVNICNSKYSGDNEPLEHDCPCPACTNYTKAYLHHL VRIGEILGSMLMTWHNLTYFQNLISRIREYIKLGKDFDFYS
Sequences:
>Translated_361_residues MSKFSFNIHHQHKKARSGIIATAHGEIRTPAFMPVGTRGTVKAMLPESVAETGADILLGNTYHLMLQPSAERIARLGGLH KFMNWDKPILTDSGGFQVMSLSKLRKITEEGVSFSSHINGDKYMLTPERSTAIQYLLGSTITMAFDECTPYPVTFEEAKT SMQLTTRWAHRSRNAFVKREGYAQFGIIQGSVYEELREQSAKGLVELDFDGYAIGGLAVGEGQELMFKVLDYAPDFLPQN KPRYLMGVGKPADIIGAVNRGIDMFDCVIPTRSGRNGQAFTKYGTVNICNSKYSGDNEPLEHDCPCPACTNYTKAYLHHL VRIGEILGSMLMTWHNLTYFQNLISRIREYIKLGKDFDFYS >Mature_360_residues SKFSFNIHHQHKKARSGIIATAHGEIRTPAFMPVGTRGTVKAMLPESVAETGADILLGNTYHLMLQPSAERIARLGGLHK FMNWDKPILTDSGGFQVMSLSKLRKITEEGVSFSSHINGDKYMLTPERSTAIQYLLGSTITMAFDECTPYPVTFEEAKTS MQLTTRWAHRSRNAFVKREGYAQFGIIQGSVYEELREQSAKGLVELDFDGYAIGGLAVGEGQELMFKVLDYAPDFLPQNK PRYLMGVGKPADIIGAVNRGIDMFDCVIPTRSGRNGQAFTKYGTVNICNSKYSGDNEPLEHDCPCPACTNYTKAYLHHLV RIGEILGSMLMTWHNLTYFQNLISRIREYIKLGKDFDFYS
Specific function: Exchanges the guanine residue with 7-aminomethyl-7- deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr). After this exchange, a cyclopentendiol moiety is attached to the 7-aminomethyl group of 7-deazaguanine, resulting in the hyper
COG id: COG0343
COG function: function code J; Queuine/archaeosine tRNA-ribosyltransferase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the queuine tRNA-ribosyltransferase family [H]
Homologues:
Organism=Homo sapiens, GI13654276, Length=346, Percent_Identity=39.5953757225434, Blast_Score=269, Evalue=2e-72, Organism=Escherichia coli, GI1786607, Length=353, Percent_Identity=55.2407932011331, Blast_Score=395, Evalue=1e-111, Organism=Caenorhabditis elegans, GI17544680, Length=339, Percent_Identity=41.8879056047198, Blast_Score=263, Evalue=8e-71, Organism=Caenorhabditis elegans, GI25146502, Length=163, Percent_Identity=32.5153374233129, Blast_Score=88, Evalue=7e-18, Organism=Drosophila melanogaster, GI19920510, Length=339, Percent_Identity=43.3628318584071, Blast_Score=304, Evalue=6e-83, Organism=Drosophila melanogaster, GI21355311, Length=181, Percent_Identity=27.0718232044199, Blast_Score=77, Evalue=2e-14,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004803 - InterPro: IPR002616 [H]
Pfam domain/function: PF01702 TGT [H]
EC number: =2.4.2.29 [H]
Molecular weight: Translated: 40426; Mature: 40295
Theoretical pI: Translated: 8.13; Mature: 8.13
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 3.9 %Met (Translated Protein) 5.5 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 3.6 %Met (Mature Protein) 5.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSKFSFNIHHQHKKARSGIIATAHGEIRTPAFMPVGTRGTVKAMLPESVAETGADILLGN CCCEEEEHHHHHHHHHCCEEEECCCCCCCCCEEECCCCCCHHHHHHHHHHHCCCCEEECC TYHLMLQPSAERIARLGGLHKFMNWDKPILTDSGGFQVMSLSKLRKITEEGVSFSSHING EEEEEECCCHHHHHHHHHHHHHHCCCCCEEECCCCEEEEEHHHHHHHHHHCCCHHHCCCC DKYMLTPERSTAIQYLLGSTITMAFDECTPYPVTFEEAKTSMQLTTRWAHRSRNAFVKRE CEEEECCCHHHHHHHHHCCHHEEEECCCCCCCEEHHHHHHHHHHHHHHHHHCCCCEEECC GYAQFGIIQGSVYEELREQSAKGLVELDFDGYAIGGLAVGEGQELMFKVLDYAPDFLPQN CCCEEEEEECHHHHHHHHHHCCCEEEECCCCEEECCEEECCCHHHHHHHHHHCHHHCCCC KPRYLMGVGKPADIIGAVNRGIDMFDCVIPTRSGRNGQAFTKYGTVNICNSKYSGDNEPL CCCEEEECCCCHHHHHHHHCCCCEEEEEECCCCCCCCCEEEEECEEEEECCCCCCCCCCC EHDCPCPACTNYTKAYLHHLVRIGEILGSMLMTWHNLTYFQNLISRIREYIKLGKDFDFY CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC S C >Mature Secondary Structure SKFSFNIHHQHKKARSGIIATAHGEIRTPAFMPVGTRGTVKAMLPESVAETGADILLGN CCEEEEHHHHHHHHHCCEEEECCCCCCCCCEEECCCCCCHHHHHHHHHHHCCCCEEECC TYHLMLQPSAERIARLGGLHKFMNWDKPILTDSGGFQVMSLSKLRKITEEGVSFSSHING EEEEEECCCHHHHHHHHHHHHHHCCCCCEEECCCCEEEEEHHHHHHHHHHCCCHHHCCCC DKYMLTPERSTAIQYLLGSTITMAFDECTPYPVTFEEAKTSMQLTTRWAHRSRNAFVKRE CEEEECCCHHHHHHHHHCCHHEEEECCCCCCCEEHHHHHHHHHHHHHHHHHCCCCEEECC GYAQFGIIQGSVYEELREQSAKGLVELDFDGYAIGGLAVGEGQELMFKVLDYAPDFLPQN CCCEEEEEECHHHHHHHHHHCCCEEEECCCCEEECCEEECCCHHHHHHHHHHCHHHCCCC KPRYLMGVGKPADIIGAVNRGIDMFDCVIPTRSGRNGQAFTKYGTVNICNSKYSGDNEPL CCCEEEECCCCHHHHHHHHCCCCEEEEEECCCCCCCCCEEEEECEEEEECCCCCCCCCCC EHDCPCPACTNYTKAYLHHLVRIGEILGSMLMTWHNLTYFQNLISRIREYIKLGKDFDFY CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC S C
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA