Click here to switch to the map view.

The map label for this gene is 157825788

Identifier: 157825788

GI number: 157825788

Start: 650622

End: 651014

Strand: Reverse

Name: 157825788

Synonym: A1C_03595

Alternate gene names: NA

Gene position: 651014-650622 (Counterclockwise)

Preceding gene: 157825790

Following gene: 157825787

Centisome position: 52.88

GC content: 31.3

Gene sequence:

>393_bases
ATGGGTAGAAAAAACGATATTATACAAAAAATCGATAGTTTTATCGGTCAGAAAATTTATTCTTTAAGACTCGCTAAGGG
GTTGTCTCGTCAACAACTTGCTGAAGTAATTGATGTTACTCATCAACAATTACAAAAATACGAAAAAGCAATTAATAGAA
TTTCTGTAGGAAGGCTAGTACTAATAGCAGAAGCTTTAGATAGGAATATTGATTATTTCTTTGAAGGTTTAGAAGAAGCT
AATAAACCGCAGCCTGTATATACTCAACATCAACGTATGTGTATTGAAGTTTCAAGAAATTTTATGAAAATTAATAGCAC
GGAAGAACAACAAGCCATTAATAATCTAGTAAAATGTTTAGCCGGAAAAGATAAGCTAAAAGCTAGCTCGTAA

Upstream 100 bases:

>100_bases
TTATCGATAGCCACATATTTTATAATAATATATTATAACATAATTTTTGTTCAAAGAAAAATTTTAAATATAGACATAAT
TAGTAACCAAGGAGAAGATA

Downstream 100 bases:

>100_bases
AATAATTAATATGCCGATTTGGGATGAACAATCAATCGCCTTTAGTCGAATGTAAGATATAATGAAGTTGCCTTGGCGAC
GAATTTATAAAGAGATATGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 130; Mature: 129

Protein sequence:

>130_residues
MGRKNDIIQKIDSFIGQKIYSLRLAKGLSRQQLAEVIDVTHQQLQKYEKAINRISVGRLVLIAEALDRNIDYFFEGLEEA
NKPQPVYTQHQRMCIEVSRNFMKINSTEEQQAINNLVKCLAGKDKLKASS

Sequences:

>Translated_130_residues
MGRKNDIIQKIDSFIGQKIYSLRLAKGLSRQQLAEVIDVTHQQLQKYEKAINRISVGRLVLIAEALDRNIDYFFEGLEEA
NKPQPVYTQHQRMCIEVSRNFMKINSTEEQQAINNLVKCLAGKDKLKASS
>Mature_129_residues
GRKNDIIQKIDSFIGQKIYSLRLAKGLSRQQLAEVIDVTHQQLQKYEKAINRISVGRLVLIAEALDRNIDYFFEGLEEAN
KPQPVYTQHQRMCIEVSRNFMKINSTEEQQAINNLVKCLAGKDKLKASS

Specific function: Unknown

COG id: COG1396

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH cro/C1-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001387
- InterPro:   IPR010982 [H]

Pfam domain/function: PF01381 HTH_3 [H]

EC number: NA

Molecular weight: Translated: 14923; Mature: 14792

Theoretical pI: Translated: 9.74; Mature: 9.74

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGRKNDIIQKIDSFIGQKIYSLRLAKGLSRQQLAEVIDVTHQQLQKYEKAINRISVGRLV
CCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LIAEALDRNIDYFFEGLEEANKPQPVYTQHQRMCIEVSRNFMKINSTEEQQAINNLVKCL
HHHHHHHCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
AGKDKLKASS
HCCHHCCCCC
>Mature Secondary Structure 
GRKNDIIQKIDSFIGQKIYSLRLAKGLSRQQLAEVIDVTHQQLQKYEKAINRISVGRLV
CCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LIAEALDRNIDYFFEGLEEANKPQPVYTQHQRMCIEVSRNFMKINSTEEQQAINNLVKCL
HHHHHHHCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
AGKDKLKASS
HCCHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9823893 [H]