Click here to switch to the map view.

The map label for this gene is psd [H]

Identifier: 157825452

GI number: 157825452

Start: 330554

End: 331249

Strand: Direct

Name: psd [H]

Synonym: A1C_01765

Alternate gene names: 157825452

Gene position: 330554-331249 (Clockwise)

Preceding gene: 157825451

Following gene: 157825453

Centisome position: 26.85

GC content: 34.2

Gene sequence:

>696_bases
ATGAGACAATATAATGATTTATTTAAGATTATTCACCGCGAAGGGTATATATTTATTGCTAGCTTTGCATTAGTAAGTTT
TTTATTAGCGTCATTTAATGAAAAACTTGGCTGTATTGGATTTATCGCTACTGCTTGGTGTATTTATTTTTTCCGTAATC
CTGATCGCTTTGTGCCTATAAGTGATGATCTGGTAATAAGTCCTGCAGACGGAATAATTCAAGAAATTAAGGAAGCACTG
CCACCCCAAGAATTAGGTCTTGGTGATGTGGAAATGATTAGAGTTAGTATTTTTCTAAATATTTTTAATGTCCATGTTAA
TAGAATCCCGGCAAACGGAAAAATTTTAGCACTTCATTATAATCCTGGAAAGTTTTTTAATGCTTCACTTGATAAAGCTA
GTATTTATAATGAACGTCAATCAGTATTAATGGAAACTGATAAAGGGCAGAAAATCGTTTTTGTTCAAATAGCAGGACTG
ATAGCAAGGCGTATAGTTTGTGATTTAGAAGAGGGGAATGAAGTTAAAACGGGTGAGCGATACGGTATAATTCGTTTTGG
TAGCAGAGTAGATGTTTATCTACCGTTGAAAACAGCTTTATTAGTGAGTAAAGGGCAGACTGCTATAGGCGGTGAAACTA
TCATTGCTGATTTTGGACGTAAAAAGATAGCAGAATTTAAGTTTGAGAGAAGATAG

Upstream 100 bases:

>100_bases
GATGAAGCAGAGCAGGCATAGTTAAAAATAATGAGAATCGCGAAGAGCAAATTACTTAGGTAATCCACTATTCGCGTTAA
GATGATTCATAGGGAGTAAA

Downstream 100 bases:

>100_bases
TTAAATATCATACCGTGGGTTTGACCAGCGTCGTTGTGTGGGTCGATGTCACCACCTTGTCATTCCCGGCGACTTAATCG
TTGGATCCAGTAAAATACTA

Product: phosphatidylserine decarboxylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 231; Mature: 231

Protein sequence:

>231_residues
MRQYNDLFKIIHREGYIFIASFALVSFLLASFNEKLGCIGFIATAWCIYFFRNPDRFVPISDDLVISPADGIIQEIKEAL
PPQELGLGDVEMIRVSIFLNIFNVHVNRIPANGKILALHYNPGKFFNASLDKASIYNERQSVLMETDKGQKIVFVQIAGL
IARRIVCDLEEGNEVKTGERYGIIRFGSRVDVYLPLKTALLVSKGQTAIGGETIIADFGRKKIAEFKFERR

Sequences:

>Translated_231_residues
MRQYNDLFKIIHREGYIFIASFALVSFLLASFNEKLGCIGFIATAWCIYFFRNPDRFVPISDDLVISPADGIIQEIKEAL
PPQELGLGDVEMIRVSIFLNIFNVHVNRIPANGKILALHYNPGKFFNASLDKASIYNERQSVLMETDKGQKIVFVQIAGL
IARRIVCDLEEGNEVKTGERYGIIRFGSRVDVYLPLKTALLVSKGQTAIGGETIIADFGRKKIAEFKFERR
>Mature_231_residues
MRQYNDLFKIIHREGYIFIASFALVSFLLASFNEKLGCIGFIATAWCIYFFRNPDRFVPISDDLVISPADGIIQEIKEAL
PPQELGLGDVEMIRVSIFLNIFNVHVNRIPANGKILALHYNPGKFFNASLDKASIYNERQSVLMETDKGQKIVFVQIAGL
IARRIVCDLEEGNEVKTGERYGIIRFGSRVDVYLPLKTALLVSKGQTAIGGETIIADFGRKKIAEFKFERR

Specific function: Unknown

COG id: COG0688

COG function: function code I; Phosphatidylserine decarboxylase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phosphatidylserine decarboxylase family. Type 3 subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003817
- InterPro:   IPR004428 [H]

Pfam domain/function: PF02666 PS_Dcarbxylase [H]

EC number: =4.1.1.65 [H]

Molecular weight: Translated: 26098; Mature: 26098

Theoretical pI: Translated: 8.78; Mature: 8.78

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRQYNDLFKIIHREGYIFIASFALVSFLLASFNEKLGCIGFIATAWCIYFFRNPDRFVPI
CCHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHEECCCCEEEEC
SDDLVISPADGIIQEIKEALPPQELGLGDVEMIRVSIFLNIFNVHVNRIPANGKILALHY
CCCEEECCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHEEEEEEEEEECCCCEEEEEEE
NPGKFFNASLDKASIYNERQSVLMETDKGQKIVFVQIAGLIARRIVCDLEEGNEVKTGER
CCCCEEECCCCHHHHHHHHHHHEEECCCCCEEEEEEHHHHHHHHHHEECCCCCCCCCCCE
YGIIRFGSRVDVYLPLKTALLVSKGQTAIGGETIIADFGRKKIAEFKFERR
EEEEEECCEEEEEECHHEEEEEECCCCCCCCCCEEECCCHHHHHHHCCCCC
>Mature Secondary Structure
MRQYNDLFKIIHREGYIFIASFALVSFLLASFNEKLGCIGFIATAWCIYFFRNPDRFVPI
CCHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHEECCCCEEEEC
SDDLVISPADGIIQEIKEALPPQELGLGDVEMIRVSIFLNIFNVHVNRIPANGKILALHY
CCCEEECCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHEEEEEEEEEECCCCEEEEEEE
NPGKFFNASLDKASIYNERQSVLMETDKGQKIVFVQIAGLIARRIVCDLEEGNEVKTGER
CCCCEEECCCCHHHHHHHHHHHEEECCCCCEEEEEEHHHHHHHHHHEECCCCCCCCCCCE
YGIIRFGSRVDVYLPLKTALLVSKGQTAIGGETIIADFGRKKIAEFKFERR
EEEEEECCEEEEEECHHEEEEEECCCCCCCCCCEEECCCHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA