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The map label for this gene is cydB [H]

Identifier: 157825422

GI number: 157825422

Start: 300129

End: 301148

Strand: Direct

Name: cydB [H]

Synonym: A1C_01615

Alternate gene names: 157825422

Gene position: 300129-301148 (Clockwise)

Preceding gene: 157825421

Following gene: 157825423

Centisome position: 24.38

GC content: 34.8

Gene sequence:

>1020_bases
ATGTTAAACTTTGCACCTTATATAGATTTACCGCTTGTTTTGGGTGGTCTTATAGCTACCGCTATTTGTTTATATGTTTT
ATTAGACGGTTTTGATTTAGGAGTAGGAATCTTATTTCCGTTTGCACCTACAGATGATTGCCGTCATAAAATGATCAATT
CTATTGCTCCTTTTTGGGACGGTAACGAAACTTGGTTAGTACTTGGCGGCGGTGGTTTATTTGCAGCTTTCCCGATGGCA
TATTCACTATTAATGCCGGCTTTATATATTCCTATTATATTAATGTTACTTGGTCTAATATTTCGTGGTGTAGCGTTTGA
ATTCCGTTTTAAGGCTAATATAGGTCATCGTTATATTTGGGATTATGCTTTTCATTTTGGTTCTATGCTTGCTGTTTTTT
GTCAAGGCTTAATGCTTGGTACGTTTGTCCAAGGAATAAAGATAGAAGGACGAGCATTTGCAGGAGGGAGTTTTGATTTT
CTTACTCCATTTTCTGTTATGACGGGGATAGCATTAATATTCGGTTATGCACTCTTGGGTGCTACTTGGCTTATTTTGAA
AACAGAAAAGAAAACACAAGATTGGGCTTATAAATCTGCTTTATATATTTTAGTTTACGTTGCACTTTTTATGGGGCTTG
TAAGTTTATGTGTTCCTTTCCTAAATAACCACATAAATTATCGTTGGTTTAGTGTACCTAATATTTACTATTTATCGATT
GTACCTATTGTAACGGCTTTAATATTTATCAAGTTAATTAAAGCCGTTAAACAAAAAAAAGAAGTAAAACCGTTTGTTTA
TACGATCTTGTTATTTTTATTAGGATATTTAGGGCTTGCAATAAGTATATGGCCATATATCGTTCCTTATAAAGTTACGC
TCGAAACCGCAGCAGCAGCACCGGAATCACAGTCTTTACTGTTGTTAGGGGCGGGGATATTCCTACCTGTCATACTTAGC
TATACTTTCTATTGTTATTATATATTCCGTGGTAAATCATCTCATCATCCGATATATTAG

Upstream 100 bases:

>100_bases
TTGTGATTTATATCATACCGCGACTTGATCGCGGTATCTATCAAAAATGTAATTCACAAGATACCGTGATCAAGTCGCGG
TATTACAATGTAGGCAATTT

Downstream 100 bases:

>100_bases
GCTCTGTGAACATTTCTAAAAAATTTAAAAAAATAACTTCTTGTCTACAAGGGTGGCAATGGTTTATTATCCTATGGCTT
AGCGGATTATTATCCACGCT

Product: cytochrome d ubiquinol oxidase subunit II

Products: NA

Alternate protein names: Cytochrome bd-I oxidase subunit II; Cytochrome d ubiquinol oxidase subunit II [H]

Number of amino acids: Translated: 339; Mature: 339

Protein sequence:

>339_residues
MLNFAPYIDLPLVLGGLIATAICLYVLLDGFDLGVGILFPFAPTDDCRHKMINSIAPFWDGNETWLVLGGGGLFAAFPMA
YSLLMPALYIPIILMLLGLIFRGVAFEFRFKANIGHRYIWDYAFHFGSMLAVFCQGLMLGTFVQGIKIEGRAFAGGSFDF
LTPFSVMTGIALIFGYALLGATWLILKTEKKTQDWAYKSALYILVYVALFMGLVSLCVPFLNNHINYRWFSVPNIYYLSI
VPIVTALIFIKLIKAVKQKKEVKPFVYTILLFLLGYLGLAISIWPYIVPYKVTLETAAAAPESQSLLLLGAGIFLPVILS
YTFYCYYIFRGKSSHHPIY

Sequences:

>Translated_339_residues
MLNFAPYIDLPLVLGGLIATAICLYVLLDGFDLGVGILFPFAPTDDCRHKMINSIAPFWDGNETWLVLGGGGLFAAFPMA
YSLLMPALYIPIILMLLGLIFRGVAFEFRFKANIGHRYIWDYAFHFGSMLAVFCQGLMLGTFVQGIKIEGRAFAGGSFDF
LTPFSVMTGIALIFGYALLGATWLILKTEKKTQDWAYKSALYILVYVALFMGLVSLCVPFLNNHINYRWFSVPNIYYLSI
VPIVTALIFIKLIKAVKQKKEVKPFVYTILLFLLGYLGLAISIWPYIVPYKVTLETAAAAPESQSLLLLGAGIFLPVILS
YTFYCYYIFRGKSSHHPIY
>Mature_339_residues
MLNFAPYIDLPLVLGGLIATAICLYVLLDGFDLGVGILFPFAPTDDCRHKMINSIAPFWDGNETWLVLGGGGLFAAFPMA
YSLLMPALYIPIILMLLGLIFRGVAFEFRFKANIGHRYIWDYAFHFGSMLAVFCQGLMLGTFVQGIKIEGRAFAGGSFDF
LTPFSVMTGIALIFGYALLGATWLILKTEKKTQDWAYKSALYILVYVALFMGLVSLCVPFLNNHINYRWFSVPNIYYLSI
VPIVTALIFIKLIKAVKQKKEVKPFVYTILLFLLGYLGLAISIWPYIVPYKVTLETAAAAPESQSLLLLGAGIFLPVILS
YTFYCYYIFRGKSSHHPIY

Specific function: Cytochrome d terminal oxidase complex is the component of the aerobic respiratory chain that predominates when cells are grown at low aeration [H]

COG id: COG1294

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 2

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli AppB [H]

Homologues:

Organism=Escherichia coli, GI1786954, Length=350, Percent_Identity=28.5714285714286, Blast_Score=133, Evalue=2e-32,
Organism=Escherichia coli, GI1787213, Length=368, Percent_Identity=26.9021739130435, Blast_Score=119, Evalue=4e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003317 [H]

Pfam domain/function: PF02322 Cyto_ox_2 [H]

EC number: 1.10.3.-

Molecular weight: Translated: 37981; Mature: 37981

Theoretical pI: Translated: 8.95; Mature: 8.95

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLNFAPYIDLPLVLGGLIATAICLYVLLDGFDLGVGILFPFAPTDDCRHKMINSIAPFWD
CCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHEEECCCCCHHHHHHHHHHHCCCCC
GNETWLVLGGGGLFAAFPMAYSLLMPALYIPIILMLLGLIFRGVAFEFRFKANIGHRYIW
CCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCHHHH
DYAFHFGSMLAVFCQGLMLGTFVQGIKIEGRAFAGGSFDFLTPFSVMTGIALIFGYALLG
HHHHHHHHHHHHHHHHHHHHHHHHCEEECCEEECCCCCCCCCHHHHHHHHHHHHHHHHHH
ATWLILKTEKKTQDWAYKSALYILVYVALFMGLVSLCVPFLNNHINYRWFSVPNIYYLSI
HEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHH
VPIVTALIFIKLIKAVKQKKEVKPFVYTILLFLLGYLGLAISIWPYIVPYKVTLETAAAA
HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEHHHHCC
PESQSLLLLGAGIFLPVILSYTFYCYYIFRGKSSHHPIY
CCCCCEEEEEHHHHHHHHHHHHHHHHEEEECCCCCCCCC
>Mature Secondary Structure
MLNFAPYIDLPLVLGGLIATAICLYVLLDGFDLGVGILFPFAPTDDCRHKMINSIAPFWD
CCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHEEECCCCCHHHHHHHHHHHCCCCC
GNETWLVLGGGGLFAAFPMAYSLLMPALYIPIILMLLGLIFRGVAFEFRFKANIGHRYIW
CCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCHHHH
DYAFHFGSMLAVFCQGLMLGTFVQGIKIEGRAFAGGSFDFLTPFSVMTGIALIFGYALLG
HHHHHHHHHHHHHHHHHHHHHHHHCEEECCEEECCCCCCCCCHHHHHHHHHHHHHHHHHH
ATWLILKTEKKTQDWAYKSALYILVYVALFMGLVSLCVPFLNNHINYRWFSVPNIYYLSI
HEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHH
VPIVTALIFIKLIKAVKQKKEVKPFVYTILLFLLGYLGLAISIWPYIVPYKVTLETAAAA
HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEHHHHCC
PESQSLLLLGAGIFLPVILSYTFYCYYIFRGKSSHHPIY
CCCCCEEEEEHHHHHHHHHHHHHHHHEEEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]