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The map label for this gene is cydA [H]

Identifier: 157825421

GI number: 157825421

Start: 298679

End: 300034

Strand: Direct

Name: cydA [H]

Synonym: A1C_01610

Alternate gene names: 157825421

Gene position: 298679-300034 (Clockwise)

Preceding gene: 157825420

Following gene: 157825422

Centisome position: 24.26

GC content: 34.22

Gene sequence:

>1356_bases
ATGGAATTTGATCAAGTATTATTATCGAGGATTCAGTTTGCTTTTACCATAAGTTTTCATATAATATTTCCTGCTTTTAC
TATAGGGCTTGCAAGCTTTTTAGCGGTACTTGAAGGGTTATGGTTAAAAACAAAAAAGCTTGTTTATCAAGAAATATACA
AATTTTGGGTGAAGATTTTTGCCGTTACTTTTGGTATGGGAGTAGTTTCGGGCGTTGTAATGTCTTATCAATTTGGTACT
AACTGGTCGAATTTTTCAGATAAGGTTGGAAATGTCCTCGGTCCACTTCTCGGTTTTGAAGTATTTACTGCCTTTTTCCT
CGAATCTTCTTTTTTAGGTATAATGTTATTCGGTTTTAATAAAGTTAGTAAAAAAGTACATTTTATTTCTACGTTAATAG
TTGCTGTTGGTACTTTAATCTCAGCTTTTTGGATACTTGCAGCTAGTAGTTGGATGCATACGCCGGCTGGTTTTGAACTG
CGAGGCGATGGTTTTTTTTTCCCTTTGAATTGGCTAGAAATTATCTTTAACCCTTCTTTTCCATATCGCTTTTTCCATAT
GATTACGGCGGCTTATTTAACTACTTCTTTTATTATCGGTGGCGTAGCTAGCTTTTATTTACTAAATAATCGTTATAAAG
AGCATGCTAAAATTATGCTTTTTATGTCGGTTTTAATGGCGTTAATCGTTGCACCTATTCAAATATTTATCGGTGATTTG
CATGGTTTAAATACTCTTAAATATCAGCCGGTTAAAGTTTCAGCTATGGAAGGGATTTGGAATACGGAAAAAGGAGCAGC
TTTTAATCTTATCGGTTTTCCTGACATGGCAGAAGAAAAAACAAAATATGCTGTAGAAATACCTTATGCTAGTAGTTTAA
TTTTAACGCATAACTTAGACGGTGAAGTGAAAGGATTAAAAGAATGGACAAAAGAAGATCGTCCGCCGGTTACAGTGGTA
TTTTTTAGTTTCCGTGTTATGATAGGCATCGGTTTCTTAATGGTATTTACAGGTATTGCGGGGTTGTATCTTTACTTGAA
AAAAAGATTATATACTACGCATTGGTTTCAATATTGGTATATATTAATGTCGCCTTCAGGTTTTATTGCAGTACTTGCTG
GTTGGTTTGTAACCGAGGTAGGTAGACAACCTTATATAGTATATAATATTTTAAAAACTGTGGATGCGGTATCACCGGTA
CTCGGCGAATATGTGTTTATTTCTCTAATGGCTTTCGTAGTGGTGTATGTGATTATTTTCGGAGCGGGTATATATTATAT
AATGCATTTAATAAAGCAAGGTATAGAAGTGATAGATAATAAAGAAACGTACGGAGGTATGTATAATCAGTTGTGA

Upstream 100 bases:

>100_bases
ATGGCAATCTCATGAATAATAAGAAACTCCTGAGATTGCTTTGTCAAAATTTTCAATTTTTTCTCGCAATGACGTTGAAT
CTTAAAACAGCAGCTTAAAT

Downstream 100 bases:

>100_bases
TTTATATCATACCGCGACTTGATCGCGGTATCTATCAAAAATGTAATTCACAAGATACCGTGATCAAGTCGCGGTATTAC
AATGTAGGCAATTTATGTTA

Product: cytochrome d ubiquinol oxidase subunit I

Products: NA

Alternate protein names: Cytochrome d ubiquinol oxidase subunit I [H]

Number of amino acids: Translated: 451; Mature: 451

Protein sequence:

>451_residues
MEFDQVLLSRIQFAFTISFHIIFPAFTIGLASFLAVLEGLWLKTKKLVYQEIYKFWVKIFAVTFGMGVVSGVVMSYQFGT
NWSNFSDKVGNVLGPLLGFEVFTAFFLESSFLGIMLFGFNKVSKKVHFISTLIVAVGTLISAFWILAASSWMHTPAGFEL
RGDGFFFPLNWLEIIFNPSFPYRFFHMITAAYLTTSFIIGGVASFYLLNNRYKEHAKIMLFMSVLMALIVAPIQIFIGDL
HGLNTLKYQPVKVSAMEGIWNTEKGAAFNLIGFPDMAEEKTKYAVEIPYASSLILTHNLDGEVKGLKEWTKEDRPPVTVV
FFSFRVMIGIGFLMVFTGIAGLYLYLKKRLYTTHWFQYWYILMSPSGFIAVLAGWFVTEVGRQPYIVYNILKTVDAVSPV
LGEYVFISLMAFVVVYVIIFGAGIYYIMHLIKQGIEVIDNKETYGGMYNQL

Sequences:

>Translated_451_residues
MEFDQVLLSRIQFAFTISFHIIFPAFTIGLASFLAVLEGLWLKTKKLVYQEIYKFWVKIFAVTFGMGVVSGVVMSYQFGT
NWSNFSDKVGNVLGPLLGFEVFTAFFLESSFLGIMLFGFNKVSKKVHFISTLIVAVGTLISAFWILAASSWMHTPAGFEL
RGDGFFFPLNWLEIIFNPSFPYRFFHMITAAYLTTSFIIGGVASFYLLNNRYKEHAKIMLFMSVLMALIVAPIQIFIGDL
HGLNTLKYQPVKVSAMEGIWNTEKGAAFNLIGFPDMAEEKTKYAVEIPYASSLILTHNLDGEVKGLKEWTKEDRPPVTVV
FFSFRVMIGIGFLMVFTGIAGLYLYLKKRLYTTHWFQYWYILMSPSGFIAVLAGWFVTEVGRQPYIVYNILKTVDAVSPV
LGEYVFISLMAFVVVYVIIFGAGIYYIMHLIKQGIEVIDNKETYGGMYNQL
>Mature_451_residues
MEFDQVLLSRIQFAFTISFHIIFPAFTIGLASFLAVLEGLWLKTKKLVYQEIYKFWVKIFAVTFGMGVVSGVVMSYQFGT
NWSNFSDKVGNVLGPLLGFEVFTAFFLESSFLGIMLFGFNKVSKKVHFISTLIVAVGTLISAFWILAASSWMHTPAGFEL
RGDGFFFPLNWLEIIFNPSFPYRFFHMITAAYLTTSFIIGGVASFYLLNNRYKEHAKIMLFMSVLMALIVAPIQIFIGDL
HGLNTLKYQPVKVSAMEGIWNTEKGAAFNLIGFPDMAEEKTKYAVEIPYASSLILTHNLDGEVKGLKEWTKEDRPPVTVV
FFSFRVMIGIGFLMVFTGIAGLYLYLKKRLYTTHWFQYWYILMSPSGFIAVLAGWFVTEVGRQPYIVYNILKTVDAVSPV
LGEYVFISLMAFVVVYVIIFGAGIYYIMHLIKQGIEVIDNKETYGGMYNQL

Specific function: Cytochrome Oxidase Subunit. [C]

COG id: COG1271

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 1

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome ubiquinol oxidase subunit 1 family [H]

Homologues:

Organism=Escherichia coli, GI1787212, Length=317, Percent_Identity=37.2239747634069, Blast_Score=220, Evalue=1e-58,
Organism=Escherichia coli, GI87081779, Length=308, Percent_Identity=37.012987012987, Blast_Score=219, Evalue=2e-58,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002585 [H]

Pfam domain/function: PF01654 Bac_Ubq_Cox [H]

EC number: 1.10.3.-

Molecular weight: Translated: 51220; Mature: 51220

Theoretical pI: Translated: 9.05; Mature: 9.05

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHHHHHHHHHCCCHHHCCHHCCC
>Mature Secondary Structure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HHHHHHHHHHHHHHHHHHCCCHHHCCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8969509; 9384377 [H]