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The map label for this gene is secF [H]

Identifier: 157825289

GI number: 157825289

Start: 160092

End: 161018

Strand: Direct

Name: secF [H]

Synonym: A1C_00855

Alternate gene names: 157825289

Gene position: 160092-161018 (Clockwise)

Preceding gene: 157825287

Following gene: 157825290

Centisome position: 13.0

GC content: 33.98

Gene sequence:

>927_bases
ATGCAAATTTATCCTTTAAGACTTTTACCTAATAAAATCGATTTTGATTTTATGAACTTTAAAGCAGTTAGTTACAGTTT
CTCAATTATTTTATCACTCATTAGCTTTATTTGGATCGGTATATATAAATTTAATTTCGGTATTGATTTTGCCGGCGGTA
TAGTTATTGAAGTAAGGCTTGATCAAGCTCCTGATTTACCAAAAATGCGAGGGGTTCTAGGTGAGCTTGGAATAGGTGAG
GTGGTCTTACAGAATTTTGGTAGTGAGCGTGATTTATCGATTAGATTCGGTATTAGTAGCGAAGAAAATCTCATGAAAAA
TATTGAGTTAATTAAAGCATCTTTGCAAAGTAGTTTTCCGTATAAGTTTGAATATCGTAAGGTAGATTTTGTTGGTCCGC
AAGTAGGTAGGCAGCTAATAGAAGCGGGTGCTATGGCTATGCTGTCCTCTTTCTTAGCTATTATGGTTTATATTTGGGTG
CGTTTTGAGTGGTATTTCGGTCTTGGTATACTTATCGCCTTAGTGCATGATGTAATACTCGCTCTTGGGTTTATGAGTAT
AACAAAGCTTGATTTTAACTTAAGCACTATCGCAGCAGTGTTAACTATTATAGGTTATTCCGTTAATGATTCGGTAGTAA
TATATGATAGGATTAGAGAAAATTTGCGTAAATATCATAAAAAAAATATCACGGAAATTATAAATTTAAGTATCAATGAG
ACTTTATCAAGAACGATTTTAACAGTAATTACCACGCTACTTGCCAATTTAGCACTTATGCTTTTCGGCGGTGAGGCAAT
CCGTAGTTTTAGCGTCCTTGTATTTTTTGGGATAATAGCCGGTACTTATTCGTCAATTTTTATCTCTGCCCCGATACTTA
CAATGTTCGCTAATAGGAAGTTTAATAACAAAGTAATAGAAAGGTAA

Upstream 100 bases:

>100_bases
TCACCTATTCAGTATAGGCTGTGGGTGCCTGACCTCTAAAATAAAATTCAATTCTTGAAATATCAGCAGTATATAACTGT
TATTCAATGAAATATTAATA

Downstream 100 bases:

>100_bases
AAAATCGTCATTGCAAGCAGGCATCGCCTGTGTGGCTAGTTTTTTTGTCATTGCGAGGCAGTTTACAATAGGTAAATTGA
CGAAGTAATCCAGTAAAAAG

Product: preprotein translocase subunit SecF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 308; Mature: 308

Protein sequence:

>308_residues
MQIYPLRLLPNKIDFDFMNFKAVSYSFSIILSLISFIWIGIYKFNFGIDFAGGIVIEVRLDQAPDLPKMRGVLGELGIGE
VVLQNFGSERDLSIRFGISSEENLMKNIELIKASLQSSFPYKFEYRKVDFVGPQVGRQLIEAGAMAMLSSFLAIMVYIWV
RFEWYFGLGILIALVHDVILALGFMSITKLDFNLSTIAAVLTIIGYSVNDSVVIYDRIRENLRKYHKKNITEIINLSINE
TLSRTILTVITTLLANLALMLFGGEAIRSFSVLVFFGIIAGTYSSIFISAPILTMFANRKFNNKVIER

Sequences:

>Translated_308_residues
MQIYPLRLLPNKIDFDFMNFKAVSYSFSIILSLISFIWIGIYKFNFGIDFAGGIVIEVRLDQAPDLPKMRGVLGELGIGE
VVLQNFGSERDLSIRFGISSEENLMKNIELIKASLQSSFPYKFEYRKVDFVGPQVGRQLIEAGAMAMLSSFLAIMVYIWV
RFEWYFGLGILIALVHDVILALGFMSITKLDFNLSTIAAVLTIIGYSVNDSVVIYDRIRENLRKYHKKNITEIINLSINE
TLSRTILTVITTLLANLALMLFGGEAIRSFSVLVFFGIIAGTYSSIFISAPILTMFANRKFNNKVIER
>Mature_308_residues
MQIYPLRLLPNKIDFDFMNFKAVSYSFSIILSLISFIWIGIYKFNFGIDFAGGIVIEVRLDQAPDLPKMRGVLGELGIGE
VVLQNFGSERDLSIRFGISSEENLMKNIELIKASLQSSFPYKFEYRKVDFVGPQVGRQLIEAGAMAMLSSFLAIMVYIWV
RFEWYFGLGILIALVHDVILALGFMSITKLDFNLSTIAAVLTIIGYSVNDSVVIYDRIRENLRKYHKKNITEIINLSINE
TLSRTILTVITTLLANLALMLFGGEAIRSFSVLVFFGIIAGTYSSIFISAPILTMFANRKFNNKVIER

Specific function: Involved in protein export [H]

COG id: COG0341

COG function: function code U; Preprotein translocase subunit SecF

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secD/secF family. SecF subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786610, Length=280, Percent_Identity=38.2142857142857, Blast_Score=214, Evalue=6e-57,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022813
- InterPro:   IPR022646
- InterPro:   IPR022645
- InterPro:   IPR005665 [H]

Pfam domain/function: PF07549 Sec_GG; PF02355 SecD_SecF [H]

EC number: NA

Molecular weight: Translated: 34814; Mature: 34814

Theoretical pI: Translated: 9.35; Mature: 9.35

Prosite motif: PS50156 SSD

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQIYPLRLLPNKIDFDFMNFKAVSYSFSIILSLISFIWIGIYKFNFGIDFAGGIVIEVRL
CCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHEECCCEECCCEEEEEEE
DQAPDLPKMRGVLGELGIGEVVLQNFGSERDLSIRFGISSEENLMKNIELIKASLQSSFP
CCCCCCHHHHHHHHCCCHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCC
YKFEYRKVDFVGPQVGRQLIEAGAMAMLSSFLAIMVYIWVRFEWYFGLGILIALVHDVIL
CEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ALGFMSITKLDFNLSTIAAVLTIIGYSVNDSVVIYDRIRENLRKYHKKNITEIINLSINE
HHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHCCHHHHHHCCHHH
TLSRTILTVITTLLANLALMLFGGEAIRSFSVLVFFGIIAGTYSSIFISAPILTMFANRK
HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
FNNKVIER
CCHHHCCC
>Mature Secondary Structure
MQIYPLRLLPNKIDFDFMNFKAVSYSFSIILSLISFIWIGIYKFNFGIDFAGGIVIEVRL
CCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHEECCCEECCCEEEEEEE
DQAPDLPKMRGVLGELGIGEVVLQNFGSERDLSIRFGISSEENLMKNIELIKASLQSSFP
CCCCCCHHHHHHHHCCCHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCC
YKFEYRKVDFVGPQVGRQLIEAGAMAMLSSFLAIMVYIWVRFEWYFGLGILIALVHDVIL
CEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ALGFMSITKLDFNLSTIAAVLTIIGYSVNDSVVIYDRIRENLRKYHKKNITEIINLSINE
HHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHCCHHHHHHCCHHH
TLSRTILTVITTLLANLALMLFGGEAIRSFSVLVFFGIIAGTYSSIFISAPILTMFANRK
HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
FNNKVIER
CCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA