| Definition | Shewanella sediminis HAW-EB3, complete genome. |
|---|---|
| Accession | NC_009831 |
| Length | 5,517,674 |
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Identifier: 157373237
GI number:
Start: 106612
End: 109413
Strand: Reverse
Name: Not Available
Synonym: Ssed_0096
Alternate gene names: NA
Gene position: NA
Preceding gene: 157373239
Following gene: 157373235
Centisome position: NA
GC content: NA
Gene sequence:
>2802_bases ATGCTAGCGGCATCATCGAAAATCAAAAACCGAATACTCATTATGCCAAAAATTGCTGAAAACCCTTTAGTTCTTGTGGA TGGTTCCTCCTACCTATATCGAGCTTATTATGCGCCACCACATCTAACAAACTCTAAAGGTGAAGCAACCGGGGCTGTCT ATGGCGTAATTAATATGCTTCGTAGCCTGCTTAATCAATATAAGCCCAGCCAGATGGCCGTTGTATTCGATGCGAAAGGA AAAACCTTTCGTAACGATATGTATGAAGAGTACAAAGCGCATAGACCAGCGATGCCGGATGATCTGCGTTCTCAAATAGA GCCACTGCACAGAATAATACGTGCTCTGGGCTTACCTCTGGTTTGCATTCCCGGCGTCGAAGCCGATGATGTTATCGGTA CCATCTCTACTCAAGCCAGTAAGGAAGGTCGAGCCGTCCTTATTAGTACGGGTGATAAAGACATGGCTCAGCTGGTCGAT GAGAATGTCACGCTTATCAATACTATGACTAACACCATAATGGGACCCTCTGAGGTTACCGAGAAATTTGGCGTCGGTCC TGAATTAATCATCGATCTGTTAGCACTTCAGGGGGACAAGGCTGACAACATTCCCGGCCTGCCTGGTGTCGGAGAAAAAA CGGCCCTTGCCATGTTAACCGGCGCAGGAAGCATAGATAAAATTCTTGCTGCACCAGAAAAAATGCCTGAGCTCGGTTTC AGAGGCTCTAAGACCATGCCCGCTAAATTAGCCGAGCATGGTGATATGTTGAAGCTATCCTACGAGCTCGCAACCATTAA ACTCGATGTCGAACTTGAGCAGGACTGGAAAGATCTCACCATAGCTCCGGCTGACAAAGATGAATTGATAAAATGCTATG GCGAGATGGAGTTCAAGCGTTGGTTGGCAGAAGTGCTTGATAACAGGAGCGGCTCAAGTGCATCGACTCAAACGTCAACG GAAGAAGATGAACTTCCTAAACAAGATATCAAAACTGAATACTCGACGATTCTTACCCATGACGAGCTTGATGAGTGGAT CGATAAGCTGTCAAAAGCCGAGCTTTTTGCGGTCGACACCGAAACTACCAGCCTCAACTATATGGAGGCGAAACTTGTCG GTCTCTCTTTTGCTGTAGAAGCGGGTAAAGCAGCCTATCTGCCCTTAGCCCATGACTATCTTGACGCGCCACAGCAACTT AACCAAGCCGAAGCATTGGCCAAGTTGAAACCATTGCTGGAAAATCCAGAGATTAAAAAAGTGGGCCAGAATTTAAAATA TGACATGAGTATTCTGGCTAATGTCGGCATAAAGCTGCAGGGTATCGCCTTCGATACTATGCTCGAATCATATGTATTCA ACTCGGTCGCATCCAAACACAACATGGATGACTTGGCACTGAAATACCTGGGCCATAAAAATATCAGTTTTGAAGAGATC GCGGGGAAAGGGGCAAAACAGCTTACCTTCAATCAGATTTCATTAGAGGTCGCCGCACCTTATGCGGCCGAAGATGCTGA CATCACCCTAAGGTTGCACCAACACCTCTGGCCAAGATTACAAAAAGAGCCGGAATTAGCCTCAATATTTACCGAAATAG AGCTGCCTCTGGTTCAAGTGCTTTCCGATATGGAGCGCCAAGGGGTGCTTATCGACAGCATGCTATTGGGTCAACAGAGC GAAGAGCTGGCCAGAACCATCGATGAGCTTGAGCAGAAGGCTTATGAAATCGCCGGTGAATCCTTTAACTTAAGCTCACC AAAACAGCTGCAAGTGCTCTTCTTTGAAAAACTGGGCTACCCGATCATCAAGAAGACGCCTAAAGGTGCGCCATCGACCG CAGAAGAGGTGTTAGTTGAGCTAGCCTTAGATTACCCATTACCTAAGATTATTCTGCAGCACAGAAGCTTAGCAAAACTA AAGAGTACCTATACCGATAAACTACCGCTGATGGTCAATGCGCAGACCGGCCGTGTTCATACCAGTTACCACCAGGCTAA TGCCGCCACCGGACGCCTGTCTTCCAGTGAGCCAAACCTGCAAAACATCCCCATTCGAACCGAAGAGGGACGACGGATCC GTCATGCATTTATTGCTCGGGAAGGCAGGAAGGTACTTGCTGCCGATTACTCTCAAATTGAGCTACGCATCATGGCACAC CTTTCTCAGGACAAAGGTTTACTGACCGCATTTGCAGAAGGTAAAGATATTCATAAGGCGACTGCAGCAGAGGTCTTCGA TGTTGACTTCACAGAGGTCACAACCGAGCAGAGACGCCGCGCCAAGGCGGTTAACTTTGGTTTGATCTATGGCATGTCCG CATTTGGACTCGCTCGCCAGCTTGATATCCCACGTGGTGAAGCCCAAAAATACATAGATACCTACTTTAAGCGTTATCCG GGCGTACTTAACTATATGGAAGAGACACGGGCAATCGCAGCCGATCTGGGTTACGTCTCTACACTCTATGGACGACGTTT ATATCTACCGGCAATTAAAGATAGAAATGCCATGCGACGTCAAGCTGCCGAGCGAGCCGCGATTAACGCTCCGATGCAAG GCACCGCAGCCGATATCATCAAGAAAGCCATGATTAATGTTGCAGACTGGATTGCTAATGAAACTGATGGTGAGATCACC CTTATCATGCAGGTGCACGATGAATTAGTATTTGAGGTCGACAGTGATAAAGCCGAAGCACTTCAGGAAAAGGTATGTCA GTTGATGGCGGAAGCTGCCGATCTTGATGTGGAACTGTTAGCCGAAGCTGGGCTCGGTGACAACTGGGAGCAGGCTCACT AG
Upstream 100 bases:
>100_bases GCTCATATCTGGTTGTACATACCACAAGCAATTTTTCACTCACAGAGTTATCCACAGGCTGTAGAATAATTTACAATGGC TGAAAACGCCCATATGTGGC
Downstream 100 bases:
>100_bases CCAAACGAACCAGGAAAACTCCCCCCTCCCACTAACGCCCCTACACTTTTGGGGCGTTTCAGTCTCTATGAACCACACCT TCATTTTTGATATCGGCGGT
Product: DNA-directed DNA polymerase
Products: NA
Alternate protein names: NA
Number of amino acids: NA
Protein sequence:
>933_residues MLAASSKIKNRILIMPKIAENPLVLVDGSSYLYRAYYAPPHLTNSKGEATGAVYGVINMLRSLLNQYKPSQMAVVFDAKG KTFRNDMYEEYKAHRPAMPDDLRSQIEPLHRIIRALGLPLVCIPGVEADDVIGTISTQASKEGRAVLISTGDKDMAQLVD ENVTLINTMTNTIMGPSEVTEKFGVGPELIIDLLALQGDKADNIPGLPGVGEKTALAMLTGAGSIDKILAAPEKMPELGF RGSKTMPAKLAEHGDMLKLSYELATIKLDVELEQDWKDLTIAPADKDELIKCYGEMEFKRWLAEVLDNRSGSSASTQTST EEDELPKQDIKTEYSTILTHDELDEWIDKLSKAELFAVDTETTSLNYMEAKLVGLSFAVEAGKAAYLPLAHDYLDAPQQL NQAEALAKLKPLLENPEIKKVGQNLKYDMSILANVGIKLQGIAFDTMLESYVFNSVASKHNMDDLALKYLGHKNISFEEI AGKGAKQLTFNQISLEVAAPYAAEDADITLRLHQHLWPRLQKEPELASIFTEIELPLVQVLSDMERQGVLIDSMLLGQQS EELARTIDELEQKAYEIAGESFNLSSPKQLQVLFFEKLGYPIIKKTPKGAPSTAEEVLVELALDYPLPKIILQHRSLAKL KSTYTDKLPLMVNAQTGRVHTSYHQANAATGRLSSSEPNLQNIPIRTEEGRRIRHAFIAREGRKVLAADYSQIELRIMAH LSQDKGLLTAFAEGKDIHKATAAEVFDVDFTEVTTEQRRRAKAVNFGLIYGMSAFGLARQLDIPRGEAQKYIDTYFKRYP GVLNYMEETRAIAADLGYVSTLYGRRLYLPAIKDRNAMRRQAAERAAINAPMQGTAADIIKKAMINVADWIANETDGEIT LIMQVHDELVFEVDSDKAEALQEKVCQLMAEAADLDVELLAEAGLGDNWEQAH
Sequences:
NA
Specific function: NA
COG id: COG0749
COG function: function code L; DNA polymerase I - 3'-5' exonuclease and polymerase domains
Gene ontology:
Cell location: NA
Metaboloic importance: NA
Operon status: NA
Operon components: NA
Similarity: NA
Homologues:
NA
Paralogues:
NA
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: NA
Theoretical pI: NA
Prosite motif: NA
Important sites: NA
Signals:
NA
Transmembrane regions:
NA
Cys/Met content:
NA
Secondary structure: NA
PDB accession: NA
Resolution: NA
Structure class: NA
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: NA
TargetDB status: NA
Availability: NA
References: NA