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The map label for this gene is rfaC [H]

Identifier: 157373059

GI number: 157373059

Start: 5347089

End: 5348060

Strand: Direct

Name: rfaC [H]

Synonym: Spro_4827

Alternate gene names: 157373059

Gene position: 5347089-5348060 (Clockwise)

Preceding gene: 157373058

Following gene: 157373060

Centisome position: 98.13

GC content: 57.3

Gene sequence:

>972_bases
ATGCAGGTGTTGATTGTAAAAACTTCCTCCATGGGAGATGTGCTCCATACGCTGCCGGCGTTAACCGACGCGATGCGGGC
GATCCCCGGCATTCGCTTCGATTGGGTGGTAGAGGAAGGTTTCAGCCAAATTCCCACCTGGCATCCGGCGGTAGACCGCG
TGATCCCGGTGGCAATCCGCCGCTGGCGAAAAAACTGGTTCGGCAGCGAAACTCGCCAGCAACGCTGCGACTTTAAACGT
GTGGTGCAGGAACGAAATTACGACGCGGTGATCGACGCCCAGGGGCTAATCAAAAGCGCCGCACTGATCACCCGCATCGC
CAAAGGCAGCAAACACGGTCAGGACAGCAAAAGCGCCCGTGAGCCCTTCGCCAGCTGGTTCTACAACCATCGCTACGATA
TCGACAAACAGCAACATGCCGTTGAGCGTACGCGCGAGCTGTTTGCCAAAAGCCTGGGCTACGAAAAACCCGACAGCGTC
GGCGATTACGCCATTGCGGCCCGTTTTCTCAGCCATCTGCCGGCCGATGCCGGCCAGTATCTGGTGTTTTTACATGCTAC
CACTCGCGATGAGAAACACTGGCCGGAAACACACTGGCGTGCGCTGATTGCGTTAACTGAGCCAACCGGTTTGAAGATCA
AACTTCCGTGGGGCGCAGAGCACGAGCGTCAACGCGCACTGCGTTTGGCAGAAGGTTTTCCGCACGTCGAGGTTTTACCC
AAGCTCAGCCTGCAGCAGGTGGCCGAAGTGCTGGCCGGTGCGAAATGCGTGGTCTCGGTTGATACCGGCCTCAGCCACCT
GACCGCCGCGCTAGACAGGCCGAACATCACGCTGTTCGGCCCCACCGATCCAGGATTGATCGGCGGTTACGGTCAGAATC
AGTTTGCCTGCCGTCCCACTCATGGCAACAGTATGGCGGACATTACTGCACAAAAAGTTGCTGAGCTCATTTGTGAAAGG
ATGACCGTATAA

Upstream 100 bases:

>100_bases
GCGATGCCGATCAGGGTTACCATCAGAGTCTGATCGATATTCAGCCACAGCAGGTGTTGGACGCGCTGACGCCGTTACTT
GCCGCCAGCGAGGAATAAAC

Downstream 100 bases:

>100_bases
TGGGAACATTCTTCAAGCAGATATATCGCTATACTCATACTCGTCCTTTTCGGCATAACGAAAACCTCTGGCCCTACGTA
AAGATTAAACGCGCTGCCAG

Product: ADP-heptose:LPS heptosyl transferase I

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 323; Mature: 323

Protein sequence:

>323_residues
MQVLIVKTSSMGDVLHTLPALTDAMRAIPGIRFDWVVEEGFSQIPTWHPAVDRVIPVAIRRWRKNWFGSETRQQRCDFKR
VVQERNYDAVIDAQGLIKSAALITRIAKGSKHGQDSKSAREPFASWFYNHRYDIDKQQHAVERTRELFAKSLGYEKPDSV
GDYAIAARFLSHLPADAGQYLVFLHATTRDEKHWPETHWRALIALTEPTGLKIKLPWGAEHERQRALRLAEGFPHVEVLP
KLSLQQVAEVLAGAKCVVSVDTGLSHLTAALDRPNITLFGPTDPGLIGGYGQNQFACRPTHGNSMADITAQKVAELICER
MTV

Sequences:

>Translated_323_residues
MQVLIVKTSSMGDVLHTLPALTDAMRAIPGIRFDWVVEEGFSQIPTWHPAVDRVIPVAIRRWRKNWFGSETRQQRCDFKR
VVQERNYDAVIDAQGLIKSAALITRIAKGSKHGQDSKSAREPFASWFYNHRYDIDKQQHAVERTRELFAKSLGYEKPDSV
GDYAIAARFLSHLPADAGQYLVFLHATTRDEKHWPETHWRALIALTEPTGLKIKLPWGAEHERQRALRLAEGFPHVEVLP
KLSLQQVAEVLAGAKCVVSVDTGLSHLTAALDRPNITLFGPTDPGLIGGYGQNQFACRPTHGNSMADITAQKVAELICER
MTV
>Mature_323_residues
MQVLIVKTSSMGDVLHTLPALTDAMRAIPGIRFDWVVEEGFSQIPTWHPAVDRVIPVAIRRWRKNWFGSETRQQRCDFKR
VVQERNYDAVIDAQGLIKSAALITRIAKGSKHGQDSKSAREPFASWFYNHRYDIDKQQHAVERTRELFAKSLGYEKPDSV
GDYAIAARFLSHLPADAGQYLVFLHATTRDEKHWPETHWRALIALTEPTGLKIKLPWGAEHERQRALRLAEGFPHVEVLP
KLSLQQVAEVLAGAKCVVSVDTGLSHLTAALDRPNITLFGPTDPGLIGGYGQNQFACRPTHGNSMADITAQKVAELICER
MTV

Specific function: Heptose transfer to the lipopolysaccharide core. It transfers the innnermost heptose to [4'-P](3-deoxy-D-manno- octulosonic acid)2-IVA [H]

COG id: COG0859

COG function: function code M; ADP-heptose:LPS heptosyltransferase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 9 family [H]

Homologues:

Organism=Escherichia coli, GI1790051, Length=315, Percent_Identity=71.4285714285714, Blast_Score=472, Evalue=1e-134,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002201
- InterPro:   IPR011908 [H]

Pfam domain/function: PF01075 Glyco_transf_9 [H]

EC number: 2.4.1.-

Molecular weight: Translated: 36263; Mature: 36263

Theoretical pI: Translated: 8.87; Mature: 8.87

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQVLIVKTSSMGDVLHTLPALTDAMRAIPGIRFDWVVEEGFSQIPTWHPAVDRVIPVAIR
CEEEEEECCCHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHCCCCCHHHHHHHHHHHH
RWRKNWFGSETRQQRCDFKRVVQERNYDAVIDAQGLIKSAALITRIAKGSKHGQDSKSAR
HHHHHHCCCHHHHHHHHHHHHHHHCCCCEEECHHHHHHHHHHHHHHHHCCCCCCCCHHHH
EPFASWFYNHRYDIDKQQHAVERTRELFAKSLGYEKPDSVGDYAIAARFLSHLPADAGQY
HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCCE
LVFLHATTRDEKHWPETHWRALIALTEPTGLKIKLPWGAEHERQRALRLAEGFPHVEVLP
EEEEEECCCCCCCCCHHHHEEEEEEECCCCEEEECCCCCCHHHHHHHHHHHCCCCHHHHC
KLSLQQVAEVLAGAKCVVSVDTGLSHLTAALDRPNITLFGPTDPGLIGGYGQNQFACRPT
CCCHHHHHHHHCCCEEEEEECCCHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCEEEECC
HGNSMADITAQKVAELICERMTV
CCCCHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MQVLIVKTSSMGDVLHTLPALTDAMRAIPGIRFDWVVEEGFSQIPTWHPAVDRVIPVAIR
CEEEEEECCCHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHCCCCCHHHHHHHHHHHH
RWRKNWFGSETRQQRCDFKRVVQERNYDAVIDAQGLIKSAALITRIAKGSKHGQDSKSAR
HHHHHHCCCHHHHHHHHHHHHHHHCCCCEEECHHHHHHHHHHHHHHHHCCCCCCCCHHHH
EPFASWFYNHRYDIDKQQHAVERTRELFAKSLGYEKPDSVGDYAIAARFLSHLPADAGQY
HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCCE
LVFLHATTRDEKHWPETHWRALIALTEPTGLKIKLPWGAEHERQRALRLAEGFPHVEVLP
EEEEEECCCCCCCCCHHHHEEEEEEECCCCEEEECCCCCCHHHHHHHHHHHCCCCHHHHC
KLSLQQVAEVLAGAKCVVSVDTGLSHLTAALDRPNITLFGPTDPGLIGGYGQNQFACRPT
CCCHHHHHHHHCCCEEEEEECCCHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCEEEECC
HGNSMADITAQKVAELICERMTV
CCCCHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8478319; 8041620; 9278503; 1624462 [H]