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The map label for this gene is rhaS [H]

Identifier: 157372469

GI number: 157372469

Start: 4700000

End: 4700857

Strand: Direct

Name: rhaS [H]

Synonym: Spro_4236

Alternate gene names: 157372469

Gene position: 4700000-4700857 (Clockwise)

Preceding gene: 157372468

Following gene: 157372473

Centisome position: 86.26

GC content: 54.31

Gene sequence:

>858_bases
ATGACTAAAGATAACAATGGGCTTGTTTACCGTCACCAGACAGAATTAACCGTTAGCTCTACGCATTGGGAATACGGTCA
GGTTGATAACGTTGCGGTCAGTGGGGCTCATCAAGCTCAACTTTCCCGTCCCAGCCACACGCTGATTGTCTATGACAGTT
TTCACGCTGCTGACGGCGGTAGCACCATCCATGGCGACATTTGGTTTGACCACAAACGGGTTCCCTGCAGACGCACAATC
GGCCAGGTCGCGGATATCGTCCCCTGCGGCTGCGGTTTTGAGGCGGTGACTTATATCGACGGCACGCTCAAATACACCGC
TATTTCCGTTTCCCCCGAGCTCATCGCGTCGCTTCCGGGTGGTGCCACTGGGCTGAATATTGAGCCTAACGCCAATATCC
GCAGCCCGTTAATCAGACAACTGTGCGCCAGCCTGAAAACCAGTACGGATGAATTACATGCAACGTCCTTGATGTTGACG
ATGCTGACTGAAACCTCACATCACCTGCAAGTGTTGTCCTCGCAGGCGCTCGCTCACCAGGCGCTCACCAAAACGCAGAT
GGAGCAACTGACTTGCTACATCGAAGATAACCTGGGTGAGACCATCACTCTTCAGGCTCTGGCTCAACTCACCGAGCTGA
GCCTGTTCCATTTTTCCCGGGTTTTTAAACAGGTTTTTGGCCTGCCACCCTATCAGTATGTTCTGCATCGAAGGCTGGAG
CGAGCCTATCAACTGGTCATCACCAGCCGGTTATCTCTGACCGAGATCTCCGCCCAATGCGGTTTCAGCGCCCCGGCGCA
ATTCAGTACCCACTTCCGTCGCCAGTTCGGCCGGTCTCCTTCGTCCCTGCGTCCCTAG

Upstream 100 bases:

>100_bases
ATCCATAGATTAGATGAATCAACCGCAGGACTTATTCATCCGATACAGGATTATTCACCATTAACCCGTCGCTTTTAAAA
TTTTCAGGGCCTCCGACACC

Downstream 100 bases:

>100_bases
CGACGGCAAAAGGTTAAGGGTTTTGATGGCTATTTTCGGGGGTAAAATAGAAACGCAACACCGGCCCGCGAGGCCCCTCT
TTGCTGCTGAATTCGGCATC

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: L-rhamnose operon regulatory protein rhaS [H]

Number of amino acids: Translated: 285; Mature: 284

Protein sequence:

>285_residues
MTKDNNGLVYRHQTELTVSSTHWEYGQVDNVAVSGAHQAQLSRPSHTLIVYDSFHAADGGSTIHGDIWFDHKRVPCRRTI
GQVADIVPCGCGFEAVTYIDGTLKYTAISVSPELIASLPGGATGLNIEPNANIRSPLIRQLCASLKTSTDELHATSLMLT
MLTETSHHLQVLSSQALAHQALTKTQMEQLTCYIEDNLGETITLQALAQLTELSLFHFSRVFKQVFGLPPYQYVLHRRLE
RAYQLVITSRLSLTEISAQCGFSAPAQFSTHFRRQFGRSPSSLRP

Sequences:

>Translated_285_residues
MTKDNNGLVYRHQTELTVSSTHWEYGQVDNVAVSGAHQAQLSRPSHTLIVYDSFHAADGGSTIHGDIWFDHKRVPCRRTI
GQVADIVPCGCGFEAVTYIDGTLKYTAISVSPELIASLPGGATGLNIEPNANIRSPLIRQLCASLKTSTDELHATSLMLT
MLTETSHHLQVLSSQALAHQALTKTQMEQLTCYIEDNLGETITLQALAQLTELSLFHFSRVFKQVFGLPPYQYVLHRRLE
RAYQLVITSRLSLTEISAQCGFSAPAQFSTHFRRQFGRSPSSLRP
>Mature_284_residues
TKDNNGLVYRHQTELTVSSTHWEYGQVDNVAVSGAHQAQLSRPSHTLIVYDSFHAADGGSTIHGDIWFDHKRVPCRRTIG
QVADIVPCGCGFEAVTYIDGTLKYTAISVSPELIASLPGGATGLNIEPNANIRSPLIRQLCASLKTSTDELHATSLMLTM
LTETSHHLQVLSSQALAHQALTKTQMEQLTCYIEDNLGETITLQALAQLTELSLFHFSRVFKQVFGLPPYQYVLHRRLER
AYQLVITSRLSLTEISAQCGFSAPAQFSTHFRRQFGRSPSSLRP

Specific function: Activates expression of the rhaBAD and rhaT operons [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 HTH araC/xylS-type DNA-binding domains [H]

Homologues:

Organism=Escherichia coli, GI1790339, Length=102, Percent_Identity=36.2745098039216, Blast_Score=69, Evalue=4e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060 [H]

Pfam domain/function: PF02311 AraC_binding; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 31569; Mature: 31438

Theoretical pI: Translated: 7.41; Mature: 7.41

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKDNNGLVYRHQTELTVSSTHWEYGQVDNVAVSGAHQAQLSRPSHTLIVYDSFHAADGG
CCCCCCCEEEEEECEEEEECCCCCCCCCCCEEECCCHHHHCCCCCEEEEEEECCCCCCCC
STIHGDIWFDHKRVPCRRTIGQVADIVPCGCGFEAVTYIDGTLKYTAISVSPELIASLPG
CEEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCEEEEECCCEEEEEEECCHHHHHHCCC
GATGLNIEPNANIRSPLIRQLCASLKTSTDELHATSLMLTMLTETSHHLQVLSSQALAHQ
CCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
ALTKTQMEQLTCYIEDNLGETITLQALAQLTELSLFHFSRVFKQVFGLPPYQYVLHRRLE
HHHHHHHHHEEEEEECCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
RAYQLVITSRLSLTEISAQCGFSAPAQFSTHFRRQFGRSPSSLRP
HHHHHHHHCCCHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure 
TKDNNGLVYRHQTELTVSSTHWEYGQVDNVAVSGAHQAQLSRPSHTLIVYDSFHAADGG
CCCCCCEEEEEECEEEEECCCCCCCCCCCEEECCCHHHHCCCCCEEEEEEECCCCCCCC
STIHGDIWFDHKRVPCRRTIGQVADIVPCGCGFEAVTYIDGTLKYTAISVSPELIASLPG
CEEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCEEEEECCCEEEEEEECCHHHHHHCCC
GATGLNIEPNANIRSPLIRQLCASLKTSTDELHATSLMLTMLTETSHHLQVLSSQALAHQ
CCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
ALTKTQMEQLTCYIEDNLGETITLQALAQLTELSLFHFSRVFKQVFGLPPYQYVLHRRLE
HHHHHHHHHEEEEEECCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
RAYQLVITSRLSLTEISAQCGFSAPAQFSTHFRRQFGRSPSSLRP
HHHHHHHHCCCHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA