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The map label for this gene is yghB [H]

Identifier: 157372446

GI number: 157372446

Start: 4670405

End: 4671067

Strand: Direct

Name: yghB [H]

Synonym: Spro_4213

Alternate gene names: 157372446

Gene position: 4670405-4671067 (Clockwise)

Preceding gene: 157372445

Following gene: 157372448

Centisome position: 85.71

GC content: 55.05

Gene sequence:

>663_bases
ATGGATGTATTACGAGAGATTGTTCATGCGCTTTGGCAGCAGGACTTTATTGCCCTTGCTGATCCCAGCGTAATTTGGGT
GGTTTATGCGGTACTTTTCACCACTCTATTTTTAGAAAACGGACTACTGCCAGCCTCCTTCTTGCCCGGCGACAGCCTGC
TGCTGTTATCCGGTGCCCTGATCGCCAAAGGCGTGATGGCCTTTGTGCCAACGCTGATCATTTTAACCGTTGCCGCCAGC
CTCGGCTGTTGGCTGAGCTACGTGCAAGGGCGCTGGCTGGGTCACACCAGTCTGGTCAAAGGCTGGCTGCTGCAACTGCC
TGCCCAATATCACCAACGTGCACATAATCTGTTTAATCGTCATGGCTTGATGGCATTAGTGATCGGCCGTTTCCTGGGTT
TTGTTCGTACCCTGCTGCCGACCATGGCCGGTATCTCAGGCCTGAACAGCACGCGTTTCCAGATATTTAACTGGCTGAGC
GCCGTGATTTGGGTTGGCGCGGTGGTCGGTCTTGGCTACGCTTTCAGCCAGATCCCACTGGTGAAACGCTATGAAAGCCA
GGTAATGACCGGGCTGATGATCCTGCCGCTGCTACTGCTGCTGGTGGGGCTGCTGGGCGCCATGCTGGTTATCTGGCGTA
AAAAGCGCGCCGCCTCTTCCTGA

Upstream 100 bases:

>100_bases
GCTATTAGCGTTACACTAGCCGGGTAACTGTCAGATACGGTCAACACCGCATCCTGGGGAAGCCAACCCCAGGCGCAACC
GGCATGCAACAGGATATATA

Downstream 100 bases:

>100_bases
TCGGCTTGCGGGCGGCAGTAGCCGCCCCGGCTGCATGCTTAGCCCTCCATCATTAAAGGAGGGTTATCACGCAGTCGGGC
CACTTCGTCGCTTGGCGTCA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 220; Mature: 220

Protein sequence:

>220_residues
MDVLREIVHALWQQDFIALADPSVIWVVYAVLFTTLFLENGLLPASFLPGDSLLLLSGALIAKGVMAFVPTLIILTVAAS
LGCWLSYVQGRWLGHTSLVKGWLLQLPAQYHQRAHNLFNRHGLMALVIGRFLGFVRTLLPTMAGISGLNSTRFQIFNWLS
AVIWVGAVVGLGYAFSQIPLVKRYESQVMTGLMILPLLLLLVGLLGAMLVIWRKKRAASS

Sequences:

>Translated_220_residues
MDVLREIVHALWQQDFIALADPSVIWVVYAVLFTTLFLENGLLPASFLPGDSLLLLSGALIAKGVMAFVPTLIILTVAAS
LGCWLSYVQGRWLGHTSLVKGWLLQLPAQYHQRAHNLFNRHGLMALVIGRFLGFVRTLLPTMAGISGLNSTRFQIFNWLS
AVIWVGAVVGLGYAFSQIPLVKRYESQVMTGLMILPLLLLLVGLLGAMLVIWRKKRAASS
>Mature_220_residues
MDVLREIVHALWQQDFIALADPSVIWVVYAVLFTTLFLENGLLPASFLPGDSLLLLSGALIAKGVMAFVPTLIILTVAAS
LGCWLSYVQGRWLGHTSLVKGWLLQLPAQYHQRAHNLFNRHGLMALVIGRFLGFVRTLLPTMAGISGLNSTRFQIFNWLS
AVIWVGAVVGLGYAFSQIPLVKRYESQVMTGLMILPLLLLLVGLLGAMLVIWRKKRAASS

Specific function: Unknown

COG id: COG0586

COG function: function code S; Uncharacterized membrane-associated protein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the dedA family [H]

Homologues:

Organism=Escherichia coli, GI1789384, Length=215, Percent_Identity=69.7674418604651, Blast_Score=297, Evalue=4e-82,
Organism=Escherichia coli, GI1789481, Length=215, Percent_Identity=60.4651162790698, Blast_Score=258, Evalue=3e-70,
Organism=Escherichia coli, GI1788656, Length=173, Percent_Identity=30.635838150289, Blast_Score=92, Evalue=2e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015414 [H]

Pfam domain/function: PF09335 SNARE_assoc [H]

EC number: NA

Molecular weight: Translated: 24255; Mature: 24255

Theoretical pI: Translated: 10.63; Mature: 10.63

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDVLREIVHALWQQDFIALADPSVIWVVYAVLFTTLFLENGLLPASFLPGDSLLLLSGAL
CHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHH
IAKGVMAFVPTLIILTVAASLGCWLSYVQGRWLGHTSLVKGWLLQLPAQYHQRAHNLFNR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHH
HGLMALVIGRFLGFVRTLLPTMAGISGLNSTRFQIFNWLSAVIWVGAVVGLGYAFSQIPL
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VKRYESQVMTGLMILPLLLLLVGLLGAMLVIWRKKRAASS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MDVLREIVHALWQQDFIALADPSVIWVVYAVLFTTLFLENGLLPASFLPGDSLLLLSGAL
CHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHH
IAKGVMAFVPTLIILTVAASLGCWLSYVQGRWLGHTSLVKGWLLQLPAQYHQRAHNLFNR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHH
HGLMALVIGRFLGFVRTLLPTMAGISGLNSTRFQIFNWLSAVIWVGAVVGLGYAFSQIPL
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VKRYESQVMTGLMILPLLLLLVGLLGAMLVIWRKKRAASS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]