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The map label for this gene is yggS [H]

Identifier: 157372264

GI number: 157372264

Start: 4471751

End: 4472458

Strand: Direct

Name: yggS [H]

Synonym: Spro_4030

Alternate gene names: 157372264

Gene position: 4471751-4472458 (Clockwise)

Preceding gene: 157372262

Following gene: 157372265

Centisome position: 82.07

GC content: 59.18

Gene sequence:

>708_bases
ATGAGCACTATCCAACAGAATCTGCAGGATGTCAGAAACCGCATTGCCGCGGCCGCTCAAGGCTGCGCACGCGCTCCAGA
AGAAGTTACGCTGCTTGCGGTAAGCAAAACCAAACCTGTGGCGGCGATCGCAGAAGCCATCGCGGCAGGCCAGCGCGCCT
TCGGCGAGAACTATGTTCAGGAAGGGGTGGATAAGGTTCAGCATTTCGCCGCGCAGCCGGAAGGCGCAACGCTGGATTGG
CACTTTATCGGCCCGTTGCAATCCAACAAGAGCCGACTGGTGGCAGAGAACTTCGCCTGGTGTCACACCGTCGATCGGCT
GCGTATCGCCTCGCGCCTGAATGAGCAGCGCCCGGCGGACATGCCGCCGCTTAACGTTCTGATCCAAATAAATATCAGCG
ATGAGCAGAGTAAGTCTGGCATTGTACTGGCTGAATTGCCGGCGCTGGCGGAGGCGGTTGCCGCCCTGCCTAACCTCAGA
CTGCGCGGGCTGATGGCTATTCCAGCCCCGCAGGAGGATTATCAGAGCCAGTTGGCGGTATTCGGCCAAATGCGCGACGC
CTTTCTGGCCCTGCAGCAGCAATATCCGCAGGTAGACACCCTGTCGATGGGCATGACCGATGACATGACGGCGGCAATTG
CCGCAGGCAGCACCATGGTGCGTATTGGCACCGCCATTTTTGGCGCCCGTGATTATTCACAGGCCTAA

Upstream 100 bases:

>100_bases
ATCGGCCGATGACCGGTACAAAGGTGCAGATCGGAAGCATTATGCTTTACACTAAGGGCCACGAATTCATCGATATCCAT
ATCAATCTCCTGGGTCAACA

Downstream 100 bases:

>100_bases
TATACTGACGAGGGATTCTAATGCAGCATCGCAAGATCACCTTTATTGGCGCCGGCAACATGGCGCGCGCTATCATCGCC
GGCCTGGTGGCGGGCGGTTA

Product: alanine racemase domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 235; Mature: 234

Protein sequence:

>235_residues
MSTIQQNLQDVRNRIAAAAQGCARAPEEVTLLAVSKTKPVAAIAEAIAAGQRAFGENYVQEGVDKVQHFAAQPEGATLDW
HFIGPLQSNKSRLVAENFAWCHTVDRLRIASRLNEQRPADMPPLNVLIQINISDEQSKSGIVLAELPALAEAVAALPNLR
LRGLMAIPAPQEDYQSQLAVFGQMRDAFLALQQQYPQVDTLSMGMTDDMTAAIAAGSTMVRIGTAIFGARDYSQA

Sequences:

>Translated_235_residues
MSTIQQNLQDVRNRIAAAAQGCARAPEEVTLLAVSKTKPVAAIAEAIAAGQRAFGENYVQEGVDKVQHFAAQPEGATLDW
HFIGPLQSNKSRLVAENFAWCHTVDRLRIASRLNEQRPADMPPLNVLIQINISDEQSKSGIVLAELPALAEAVAALPNLR
LRGLMAIPAPQEDYQSQLAVFGQMRDAFLALQQQYPQVDTLSMGMTDDMTAAIAAGSTMVRIGTAIFGARDYSQA
>Mature_234_residues
STIQQNLQDVRNRIAAAAQGCARAPEEVTLLAVSKTKPVAAIAEAIAAGQRAFGENYVQEGVDKVQHFAAQPEGATLDWH
FIGPLQSNKSRLVAENFAWCHTVDRLRIASRLNEQRPADMPPLNVLIQINISDEQSKSGIVLAELPALAEAVAALPNLRL
RGLMAIPAPQEDYQSQLAVFGQMRDAFLALQQQYPQVDTLSMGMTDDMTAAIAAGSTMVRIGTAIFGARDYSQA

Specific function: Unknown

COG id: COG0325

COG function: function code R; Predicted enzyme with a TIM-barrel fold

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0001 family [H]

Homologues:

Organism=Homo sapiens, GI6005842, Length=233, Percent_Identity=39.9141630901288, Blast_Score=135, Evalue=3e-32,
Organism=Escherichia coli, GI1789321, Length=235, Percent_Identity=73.1914893617021, Blast_Score=350, Evalue=5e-98,
Organism=Caenorhabditis elegans, GI17533025, Length=242, Percent_Identity=33.8842975206612, Blast_Score=127, Evalue=4e-30,
Organism=Saccharomyces cerevisiae, GI6319435, Length=218, Percent_Identity=36.697247706422, Blast_Score=109, Evalue=4e-25,
Organism=Drosophila melanogaster, GI45550861, Length=243, Percent_Identity=38.6831275720165, Blast_Score=140, Evalue=8e-34,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001608
- InterPro:   IPR011078 [H]

Pfam domain/function: PF01168 Ala_racemase_N [H]

EC number: NA

Molecular weight: Translated: 25399; Mature: 25268

Theoretical pI: Translated: 5.04; Mature: 5.04

Prosite motif: PS01211 UPF0001

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTIQQNLQDVRNRIAAAAQGCARAPEEVTLLAVSKTKPVAAIAEAIAAGQRAFGENYVQ
CCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHH
EGVDKVQHFAAQPEGATLDWHFIGPLQSNKSRLVAENFAWCHTVDRLRIASRLNEQRPAD
HHHHHHHHHHCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
MPPLNVLIQINISDEQSKSGIVLAELPALAEAVAALPNLRLRGLMAIPAPQEDYQSQLAV
CCCCEEEEEEEECCCCCCCCEEEEHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHH
FGQMRDAFLALQQQYPQVDTLSMGMTDDMTAAIAAGSTMVRIGTAIFGARDYSQA
HHHHHHHHHHHHHHCCCCCEEECCCCCCHHHHHHCCCHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure 
STIQQNLQDVRNRIAAAAQGCARAPEEVTLLAVSKTKPVAAIAEAIAAGQRAFGENYVQ
CHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHH
EGVDKVQHFAAQPEGATLDWHFIGPLQSNKSRLVAENFAWCHTVDRLRIASRLNEQRPAD
HHHHHHHHHHCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
MPPLNVLIQINISDEQSKSGIVLAELPALAEAVAALPNLRLRGLMAIPAPQEDYQSQLAV
CCCCEEEEEEEECCCCCCCCEEEEHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHH
FGQMRDAFLALQQQYPQVDTLSMGMTDDMTAAIAAGSTMVRIGTAIFGARDYSQA
HHHHHHHHHHHHHHCCCCCEEECCCCCCHHHHHHCCCHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]