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The map label for this gene is yqgF [C]

Identifier: 157372262

GI number: 157372262

Start: 4470289

End: 4470711

Strand: Direct

Name: yqgF [C]

Synonym: Spro_4028

Alternate gene names: 157372262

Gene position: 4470289-4470711 (Clockwise)

Preceding gene: 157372261

Following gene: 157372264

Centisome position: 82.04

GC content: 61.23

Gene sequence:

>423_bases
ATGACCAACCGCACCATTATCGCCTTCGACTTCGGCACCAAGAGCATTGGCGCCGCCATTGGGCAGGAACTGACTGGCAG
CGCCCGAGCGCTGGCCGCCTTCAAAGCACAAGACGGTTCCCCGGACTGGCAAAAGATCGAAAAACTGCTCAAAGAGTGGC
AGCCGGATCTGGTGGTGGTCGGCCTGCCGCTGAACATGGATGGCACCGAGCAGTTGGTGACCGAACAAGCACGCAAGTTC
GCCAACCGCCTGCACGGCCGTTTTGGCGTACAGATAGCGCTGCATGATGAGCGCCTGAGTACCGTCGAAGCCCGCGCCAA
CCTGTTCGACCGTGGCGGCTTCCGCGCGCTGGACAAGGGCAGCGTGGACTCCGCCTCGGCGGTGGTTATTTTGGAAAGCT
GGTTTGAGCGGCAGCTGGGTTAA

Upstream 100 bases:

>100_bases
ACATTCTGTTCCATACGCCAATCGCCAGCCGCTGGCGTGAAGCCGCCAACCGCCTGGGCATCGACATCTGCAGCATTGCC
AACCACGCAGGACACGCCTG

Downstream 100 bases:

>100_bases
TCCCTATTCTGAGTGTCTTGCCCTCCACCAAGTAAGCCGGTGCTGATCCGCTGCTGCAGGCCCTGTTCAAAGGTCTGCAT
GCCGGACTGCCCGCCGGTTT

Product: Holliday junction resolvase-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 140; Mature: 139

Protein sequence:

>140_residues
MTNRTIIAFDFGTKSIGAAIGQELTGSARALAAFKAQDGSPDWQKIEKLLKEWQPDLVVVGLPLNMDGTEQLVTEQARKF
ANRLHGRFGVQIALHDERLSTVEARANLFDRGGFRALDKGSVDSASAVVILESWFERQLG

Sequences:

>Translated_140_residues
MTNRTIIAFDFGTKSIGAAIGQELTGSARALAAFKAQDGSPDWQKIEKLLKEWQPDLVVVGLPLNMDGTEQLVTEQARKF
ANRLHGRFGVQIALHDERLSTVEARANLFDRGGFRALDKGSVDSASAVVILESWFERQLG
>Mature_139_residues
TNRTIIAFDFGTKSIGAAIGQELTGSARALAAFKAQDGSPDWQKIEKLLKEWQPDLVVVGLPLNMDGTEQLVTEQARKFA
NRLHGRFGVQIALHDERLSTVEARANLFDRGGFRALDKGSVDSASAVVILESWFERQLG

Specific function: Could be a nuclease that resolves Holliday junction intermediates in genetic recombination

COG id: COG0816

COG function: function code L; Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis)

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the yqgF HJR family

Homologues:

Organism=Escherichia coli, GI1789318, Length=133, Percent_Identity=73.6842105263158, Blast_Score=216, Evalue=5e-58,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RUVX_SERP5 (A8GJ33)

Other databases:

- EMBL:   CP000826
- RefSeq:   YP_001480251.1
- ProteinModelPortal:   A8GJ33
- SMR:   A8GJ33
- STRING:   A8GJ33
- GeneID:   5605521
- GenomeReviews:   CP000826_GR
- KEGG:   spe:Spro_4028
- eggNOG:   COG0816
- HOGENOM:   HBG607919
- OMA:   ESYFENQ
- ProtClustDB:   PRK00109
- BioCyc:   SPRO399741:SPRO_4028-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00651
- InterPro:   IPR005227
- InterPro:   IPR006641
- InterPro:   IPR012337
- Gene3D:   G3DSA:3.30.420.140
- SMART:   SM00732
- TIGRFAMs:   TIGR00250

Pfam domain/function: PF03652 UPF0081; SSF53098 RNaseH_fold

EC number: NA

Molecular weight: Translated: 15386; Mature: 15254

Theoretical pI: Translated: 6.54; Mature: 6.54

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
0.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTNRTIIAFDFGTKSIGAAIGQELTGSARALAAFKAQDGSPDWQKIEKLLKEWQPDLVVV
CCCCEEEEEECCCHHHHHHHHHHHCCCHHHHHHEECCCCCCCHHHHHHHHHHCCCCEEEE
GLPLNMDGTEQLVTEQARKFANRLHGRFGVQIALHDERLSTVEARANLFDRGGFRALDKG
EECCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCC
SVDSASAVVILESWFERQLG
CCCCCHHHHHHHHHHHHCCC
>Mature Secondary Structure 
TNRTIIAFDFGTKSIGAAIGQELTGSARALAAFKAQDGSPDWQKIEKLLKEWQPDLVVV
CCCEEEEEECCCHHHHHHHHHHHCCCHHHHHHEECCCCCCCHHHHHHHHHHCCCCEEEE
GLPLNMDGTEQLVTEQARKFANRLHGRFGVQIALHDERLSTVEARANLFDRGGFRALDKG
EECCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCC
SVDSASAVVILESWFERQLG
CCCCCHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA