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The map label for this gene is yagI [H]

Identifier: 157372199

GI number: 157372199

Start: 4394128

End: 4394922

Strand: Reverse

Name: yagI [H]

Synonym: Spro_3965

Alternate gene names: 157372199

Gene position: 4394922-4394128 (Counterclockwise)

Preceding gene: 157372200

Following gene: 157372198

Centisome position: 80.66

GC content: 58.87

Gene sequence:

>795_bases
ATGGCAGACGACCAAGGGTGTAAATATCTGATCCCAGGACTGGATCGCGGATTGCAACTGTTGCTGGCGTTTGGCGAGCA
ACATAAGGAAATGACCTTTGCCCAATTGCATCGCCTGGTCGATATGCCAAAAGCTACCGCCTATCGCGTGGTGCAAACGC
TGGAGCATCTGGGCTTTCTGGAGCGCAATCCACGCACCAACACTTTCTCGCTGGGCATCAAGGTACTGCGCCTGGGCTTT
GAATATATTGCCTCACTGGACGTGGCGCAGGCCGGTCAGCCGGTAATAGAACAACTGCGCGATCGCAGCCAGTGCAGTAG
TCATCTGGCGATCCGTGATGGACGCGATGTGATCTACATCGCCCGCGTCAGCGCCGCCGGTTCGCAAATCAACCAGGTCA
GCGTCGGCACCCGTCTGCCGGTGCATCAAACTTCGCTTGGCCGCATGTTGCTGACCAGCGCCACCCGCGAAGAGTTCGAA
CTGCTGTATCCGCAGGAACAACTGCCGGGCAGCGGACCGGGCACCCCGGCGGATCGCGAAACGTTATGGCAAATGGTGCA
GCAGGACAAGGCGCGCGGCTATGTGATCGGCGAGTCGTTTTTCCGCCACGGTATTTCCTCTATCGTCTACCCGATCTTCA
ACCGCGAGCAGCGGGTTGAGGCCGTGATCAGCATTATGGTGCCGTCCGATGAGATCCCAAAAGCGGATCGCGAGCGGTTA
CGCATGGAGGTGCGGGACGCCGCAGTGAAAATCTCCGGCTTCCTGGGCGCACCGCCACAGGCTAACGCCGGTTAA

Upstream 100 bases:

>100_bases
CTGCTGTCACCGTTGGCGAACTTCGTGACCGGTCAGTTGTTGCCGGTTAACGGCGGCTTCGTCTTTAACTAATCAATATT
CAATTAGCCAGGAGCAGCAC

Downstream 100 bases:

>100_bases
CTGACGACACCGACTCTTTTACTCAGGCAGGGATAAGGCTCATGGCAAACAGGGGCCGGGGTTCGATCATGCCTGAAAAC
AGCATTCAACGAGAACGTGA

Product: IclR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 264; Mature: 263

Protein sequence:

>264_residues
MADDQGCKYLIPGLDRGLQLLLAFGEQHKEMTFAQLHRLVDMPKATAYRVVQTLEHLGFLERNPRTNTFSLGIKVLRLGF
EYIASLDVAQAGQPVIEQLRDRSQCSSHLAIRDGRDVIYIARVSAAGSQINQVSVGTRLPVHQTSLGRMLLTSATREEFE
LLYPQEQLPGSGPGTPADRETLWQMVQQDKARGYVIGESFFRHGISSIVYPIFNREQRVEAVISIMVPSDEIPKADRERL
RMEVRDAAVKISGFLGAPPQANAG

Sequences:

>Translated_264_residues
MADDQGCKYLIPGLDRGLQLLLAFGEQHKEMTFAQLHRLVDMPKATAYRVVQTLEHLGFLERNPRTNTFSLGIKVLRLGF
EYIASLDVAQAGQPVIEQLRDRSQCSSHLAIRDGRDVIYIARVSAAGSQINQVSVGTRLPVHQTSLGRMLLTSATREEFE
LLYPQEQLPGSGPGTPADRETLWQMVQQDKARGYVIGESFFRHGISSIVYPIFNREQRVEAVISIMVPSDEIPKADRERL
RMEVRDAAVKISGFLGAPPQANAG
>Mature_263_residues
ADDQGCKYLIPGLDRGLQLLLAFGEQHKEMTFAQLHRLVDMPKATAYRVVQTLEHLGFLERNPRTNTFSLGIKVLRLGFE
YIASLDVAQAGQPVIEQLRDRSQCSSHLAIRDGRDVIYIARVSAAGSQINQVSVGTRLPVHQTSLGRMLLTSATREEFEL
LYPQEQLPGSGPGTPADRETLWQMVQQDKARGYVIGESFFRHGISSIVYPIFNREQRVEAVISIMVPSDEIPKADRERLR
MEVRDAAVKISGFLGAPPQANAG

Specific function: Unknown

COG id: COG1414

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 iclR-ED (iclR effector binding) domain [H]

Homologues:

Organism=Escherichia coli, GI1786468, Length=249, Percent_Identity=28.5140562248996, Blast_Score=137, Evalue=5e-34,
Organism=Escherichia coli, GI1786715, Length=244, Percent_Identity=27.0491803278689, Blast_Score=90, Evalue=1e-19,
Organism=Escherichia coli, GI1788131, Length=237, Percent_Identity=25.3164556962025, Blast_Score=85, Evalue=5e-18,
Organism=Escherichia coli, GI1790752, Length=195, Percent_Identity=24.6153846153846, Blast_Score=77, Evalue=9e-16,
Organism=Escherichia coli, GI87082359, Length=224, Percent_Identity=22.3214285714286, Blast_Score=69, Evalue=2e-13,
Organism=Escherichia coli, GI1789999, Length=246, Percent_Identity=19.9186991869919, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014757
- InterPro:   IPR005471
- InterPro:   IPR011991 [H]

Pfam domain/function: PF09339 HTH_IclR; PF01614 IclR [H]

EC number: NA

Molecular weight: Translated: 29415; Mature: 29284

Theoretical pI: Translated: 7.67; Mature: 7.67

Prosite motif: PS51077 HTH_ICLR ; PS51078 ICLR_ED

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MADDQGCKYLIPGLDRGLQLLLAFGEQHKEMTFAQLHRLVDMPKATAYRVVQTLEHLGFL
CCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCHH
ERNPRTNTFSLGIKVLRLGFEYIASLDVAQAGQPVIEQLRDRSQCSSHLAIRDGRDVIYI
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCEEECCCCEEEE
ARVSAAGSQINQVSVGTRLPVHQTSLGRMLLTSATREEFELLYPQEQLPGSGPGTPADRE
EEECCCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCCCCHH
TLWQMVQQDKARGYVIGESFFRHGISSIVYPIFNREQRVEAVISIMVPSDEIPKADRERL
HHHHHHHHHCCCCEEECHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCCCCCHHHHHH
RMEVRDAAVKISGFLGAPPQANAG
HHHHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure 
ADDQGCKYLIPGLDRGLQLLLAFGEQHKEMTFAQLHRLVDMPKATAYRVVQTLEHLGFL
CCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCHH
ERNPRTNTFSLGIKVLRLGFEYIASLDVAQAGQPVIEQLRDRSQCSSHLAIRDGRDVIYI
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCEEECCCCEEEE
ARVSAAGSQINQVSVGTRLPVHQTSLGRMLLTSATREEFELLYPQEQLPGSGPGTPADRE
EEECCCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCCCCHH
TLWQMVQQDKARGYVIGESFFRHGISSIVYPIFNREQRVEAVISIMVPSDEIPKADRERL
HHHHHHHHHCCCCEEECHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCCCCCHHHHHH
RMEVRDAAVKISGFLGAPPQANAG
HHHHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]