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The map label for this gene is ydfH [H]

Identifier: 157372140

GI number: 157372140

Start: 4325729

End: 4326463

Strand: Direct

Name: ydfH [H]

Synonym: Spro_3906

Alternate gene names: 157372140

Gene position: 4325729-4326463 (Clockwise)

Preceding gene: 157372135

Following gene: 157372144

Centisome position: 79.39

GC content: 55.1

Gene sequence:

>735_bases
ATGCCATGTTTTTGTGTACTATGTCTAAAAACTTTCTTCTTGCAGGAGCAGAACGTGATGAGCCTTGACGCAGAGAGCCA
GGAACTCCCGACGGCAGAGGAAGCCGGAATGTCACTGAATGAACTGGCCTATCGGCGCTTTAAGCAGGCATTGGTGACGT
TGAGTTATAAGCCTGGTGAATATCTCAATACCGCGCAGGTAATGAGTGAGCTGGATATGGGCAGAACGCCTATCAATCAG
GCAATCCACCGGCTGGCCAATGAAGGGTTGTTACAGGTGATCCCGCGTAAAGGAGTGATGGTTTCGCCGCTGTCGATGGA
TGACGCACTGGAACTGATTGAAGTTCGACTGGCCAATGAAATGCTGTGTATGCGGCTGGCAAGCAAGCGAATTACCGAAC
CACAAGTCGCCGCACTGACGGCCCTCAATCAACAAATTGAAGTCGCCAGCCAGCGCCGTGACCGGGTGCAGATGATGACG
CTGGACCACCAGTTCCACCAGCAGCTGGCGCAGATCGCCGGGAATAATATGCTGGCGGACATCCTGAGCGTGCTGCATGC
CAGGGCGCAACGCTTTTGGGCCAGCACGCTGTCACGCGAAGGTCATATGCGAGAGGTGATCGAAGAACATCGAGCCATTA
TCGCTGCACTGGCCGCACAGGATGACGACGCAGCCGCCAATGCAGCAGAGGCGCACATTCTGTCTTTCCGCAGCGCGCTG
CTGCATGAGGGCTGA

Upstream 100 bases:

>100_bases
ATTCAGGTAAAGTGAAGGTCAGTCTCATGGCGTTTGTGTCCCTTTGGTTAAAATACTGTGAAATTTCACTATATCTTTAG
CTACCAAATAAGCGATTTCC

Downstream 100 bases:

>100_bases
TTGGGTAGAGATAACGCCAAAGCAAAAACCCGGTGAGTCTAAAGCTACCGGGTTTTAAACGGCAGGATAAATACTGGCAG
GTGAGGAGTTTTACTCTTCG

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 244; Mature: 243

Protein sequence:

>244_residues
MPCFCVLCLKTFFLQEQNVMSLDAESQELPTAEEAGMSLNELAYRRFKQALVTLSYKPGEYLNTAQVMSELDMGRTPINQ
AIHRLANEGLLQVIPRKGVMVSPLSMDDALELIEVRLANEMLCMRLASKRITEPQVAALTALNQQIEVASQRRDRVQMMT
LDHQFHQQLAQIAGNNMLADILSVLHARAQRFWASTLSREGHMREVIEEHRAIIAALAAQDDDAAANAAEAHILSFRSAL
LHEG

Sequences:

>Translated_244_residues
MPCFCVLCLKTFFLQEQNVMSLDAESQELPTAEEAGMSLNELAYRRFKQALVTLSYKPGEYLNTAQVMSELDMGRTPINQ
AIHRLANEGLLQVIPRKGVMVSPLSMDDALELIEVRLANEMLCMRLASKRITEPQVAALTALNQQIEVASQRRDRVQMMT
LDHQFHQQLAQIAGNNMLADILSVLHARAQRFWASTLSREGHMREVIEEHRAIIAALAAQDDDAAANAAEAHILSFRSAL
LHEG
>Mature_243_residues
PCFCVLCLKTFFLQEQNVMSLDAESQELPTAEEAGMSLNELAYRRFKQALVTLSYKPGEYLNTAQVMSELDMGRTPINQA
IHRLANEGLLQVIPRKGVMVSPLSMDDALELIEVRLANEMLCMRLASKRITEPQVAALTALNQQIEVASQRRDRVQMMTL
DHQFHQQLAQIAGNNMLADILSVLHARAQRFWASTLSREGHMREVIEEHRAIIAALAAQDDDAAANAAEAHILSFRSALL
HEG

Specific function: Unknown

COG id: COG1802

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787821, Length=212, Percent_Identity=28.3018867924528, Blast_Score=79, Evalue=3e-16,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 27295; Mature: 27164

Theoretical pI: Translated: 5.58; Mature: 5.58

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
5.3 %Met     (Translated Protein)
7.0 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
4.9 %Met     (Mature Protein)
6.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPCFCVLCLKTFFLQEQNVMSLDAESQELPTAEEAGMSLNELAYRRFKQALVTLSYKPGE
CCHHHHHHHHHHHHCCCCCCCCCCCCHHCCCHHHHCCCHHHHHHHHHHHHHHHHCCCCCC
YLNTAQVMSELDMGRTPINQAIHRLANEGLLQVIPRKGVMVSPLSMDDALELIEVRLANE
HHHHHHHHHHHHCCCCCHHHHHHHHHHCCHHHHHCCCCEEECCCCHHHHHHHHHHHHHHH
MLCMRLASKRITEPQVAALTALNQQIEVASQRRDRVQMMTLDHQFHQQLAQIAGNNMLAD
HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
ILSVLHARAQRFWASTLSREGHMREVIEEHRAIIAALAAQDDDAAANAAEAHILSFRSAL
HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
LHEG
HCCC
>Mature Secondary Structure 
PCFCVLCLKTFFLQEQNVMSLDAESQELPTAEEAGMSLNELAYRRFKQALVTLSYKPGE
CHHHHHHHHHHHHCCCCCCCCCCCCHHCCCHHHHCCCHHHHHHHHHHHHHHHHCCCCCC
YLNTAQVMSELDMGRTPINQAIHRLANEGLLQVIPRKGVMVSPLSMDDALELIEVRLANE
HHHHHHHHHHHHCCCCCHHHHHHHHHHCCHHHHHCCCCEEECCCCHHHHHHHHHHHHHHH
MLCMRLASKRITEPQVAALTALNQQIEVASQRRDRVQMMTLDHQFHQQLAQIAGNNMLAD
HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
ILSVLHARAQRFWASTLSREGHMREVIEEHRAIIAALAAQDDDAAANAAEAHILSFRSAL
HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
LHEG
HCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]