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The map label for this gene is yhjC [H]

Identifier: 157372088

GI number: 157372088

Start: 4264203

End: 4265123

Strand: Direct

Name: yhjC [H]

Synonym: Spro_3853

Alternate gene names: 157372088

Gene position: 4264203-4265123 (Clockwise)

Preceding gene: 157372085

Following gene: 157372089

Centisome position: 78.26

GC content: 54.51

Gene sequence:

>921_bases
ATGCTGCCCACACATGAATACGCCAACGACCTGATCCTGTTCGCCCTGATTGTTGACTGCGGTTCTTTCAGCAAAGCCGC
TGAAACCGCCGGCATCACCAGCTCGGTGGTCAGCAAGCGCATTGGTCGCCTGGAGAAATCTCTCGGCGCACGCCTGCTGT
ACCGCACCACCCGCAGCCTGACGCTAACCGAAAACGGCCAAAGCCTGTACCGTCAGGCCAAAGAAATCAGCGCAAAAACT
CAGGAAGCCCTGAACGTCATCAGTGAACACAGCGATGAACTGACCGGCATCATCCGCATGTCGGTGCCGACCATTTCAGG
GGAATTGTTGTTAAGTGAAAGCGTGGCGGAATTTTGTGCCCTTCACCCGAACCTGAAGGTGGAAATGCGGCTGGAAAATC
GCTTCGCCGATTTGGTCAACGAAGGGATAGATCTGGCTATCCGCACCGGCACCCTGCCGGATTCCAGCCTGATCGCCCGT
CCGATCCTGAACTCCCGCTGGGTGATCGTTTGCTCGCCCAGCTATCTGCAACAATATTCTGAGCCGCAGTCAGCAGGCGA
CCTGCTCGAGCATAACTGTCTGACCTATACCTATCAGGAAAGCGGCACCGACAACTGGCTGATGAAGCAACCGGGCAGCA
ACAAGATTTATGAACTGCAGGTTAGTGGCAACCTGTCCGCCAATAACGCCCGGGCGATCCGCAAGGCGGTGATCGCCGGT
TATGGCATTGCCATGGTGCCACGCTGCATGGTGTACGAGGATTTACAGGAAGGGGCCATGGTGGAGGTTTTGAGCGGCCA
CTGTGGCAAGGTATTAGGTATTTACGCGGTTTACCCTTATACCCGCAATTTACCGTTAAAAACCCGGCTGCTGATCGAAC
ATATCATTACGTCCTATCAGAATATCAGCCACTATTTTTGA

Upstream 100 bases:

>100_bases
AGTGATATCAATAACAATTCTCATATTGTCGCCAACGATTGATTCCTGAACCTGAGGATTTACACTGGCCGTTACTCCGG
GACGAGGAAAACACCCACCG

Downstream 100 bases:

>100_bases
AGTGAGTCACATAATTATTTTTCGTTGGCTCGTGAGCGAGCCACGGGATTACTCCATTTTTGAATATAATCTATTGGTAA
TTATTGTGTAATCAATGTGA

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 306; Mature: 306

Protein sequence:

>306_residues
MLPTHEYANDLILFALIVDCGSFSKAAETAGITSSVVSKRIGRLEKSLGARLLYRTTRSLTLTENGQSLYRQAKEISAKT
QEALNVISEHSDELTGIIRMSVPTISGELLLSESVAEFCALHPNLKVEMRLENRFADLVNEGIDLAIRTGTLPDSSLIAR
PILNSRWVIVCSPSYLQQYSEPQSAGDLLEHNCLTYTYQESGTDNWLMKQPGSNKIYELQVSGNLSANNARAIRKAVIAG
YGIAMVPRCMVYEDLQEGAMVEVLSGHCGKVLGIYAVYPYTRNLPLKTRLLIEHIITSYQNISHYF

Sequences:

>Translated_306_residues
MLPTHEYANDLILFALIVDCGSFSKAAETAGITSSVVSKRIGRLEKSLGARLLYRTTRSLTLTENGQSLYRQAKEISAKT
QEALNVISEHSDELTGIIRMSVPTISGELLLSESVAEFCALHPNLKVEMRLENRFADLVNEGIDLAIRTGTLPDSSLIAR
PILNSRWVIVCSPSYLQQYSEPQSAGDLLEHNCLTYTYQESGTDNWLMKQPGSNKIYELQVSGNLSANNARAIRKAVIAG
YGIAMVPRCMVYEDLQEGAMVEVLSGHCGKVLGIYAVYPYTRNLPLKTRLLIEHIITSYQNISHYF
>Mature_306_residues
MLPTHEYANDLILFALIVDCGSFSKAAETAGITSSVVSKRIGRLEKSLGARLLYRTTRSLTLTENGQSLYRQAKEISAKT
QEALNVISEHSDELTGIIRMSVPTISGELLLSESVAEFCALHPNLKVEMRLENRFADLVNEGIDLAIRTGTLPDSSLIAR
PILNSRWVIVCSPSYLQQYSEPQSAGDLLEHNCLTYTYQESGTDNWLMKQPGSNKIYELQVSGNLSANNARAIRKAVIAG
YGIAMVPRCMVYEDLQEGAMVEVLSGHCGKVLGIYAVYPYTRNLPLKTRLLIEHIITSYQNISHYF

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693193, Length=281, Percent_Identity=32.7402135231317, Blast_Score=162, Evalue=2e-41,
Organism=Escherichia coli, GI1786401, Length=296, Percent_Identity=31.0810810810811, Blast_Score=149, Evalue=3e-37,
Organism=Escherichia coli, GI1789440, Length=290, Percent_Identity=32.0689655172414, Blast_Score=139, Evalue=2e-34,
Organism=Escherichia coli, GI87081978, Length=287, Percent_Identity=28.9198606271777, Blast_Score=135, Evalue=3e-33,
Organism=Escherichia coli, GI1789639, Length=294, Percent_Identity=26.8707482993197, Blast_Score=123, Evalue=2e-29,
Organism=Escherichia coli, GI1787128, Length=290, Percent_Identity=25.8620689655172, Blast_Score=121, Evalue=7e-29,
Organism=Escherichia coli, GI1787589, Length=280, Percent_Identity=28.2142857142857, Blast_Score=118, Evalue=4e-28,
Organism=Escherichia coli, GI1788706, Length=254, Percent_Identity=27.5590551181102, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1789173, Length=256, Percent_Identity=28.125, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI145693105, Length=161, Percent_Identity=27.9503105590062, Blast_Score=75, Evalue=8e-15,
Organism=Escherichia coli, GI1790011, Length=296, Percent_Identity=23.3108108108108, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1786448, Length=266, Percent_Identity=22.5563909774436, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1789506, Length=179, Percent_Identity=27.3743016759777, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1787601, Length=169, Percent_Identity=26.0355029585799, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1786713, Length=257, Percent_Identity=26.4591439688716, Blast_Score=62, Evalue=4e-11,
Organism=Escherichia coli, GI1788748, Length=164, Percent_Identity=26.219512195122, Blast_Score=62, Evalue=6e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33953; Mature: 33953

Theoretical pI: Translated: 6.62; Mature: 6.62

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLPTHEYANDLILFALIVDCGSFSKAAETAGITSSVVSKRIGRLEKSLGARLLYRTTRSL
CCCCHHHHHHHHHHHHHHHCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCEE
TLTENGQSLYRQAKEISAKTQEALNVISEHSDELTGIIRMSVPTISGELLLSESVAEFCA
EEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHEEEEEEECCCCCCHHHHHHHHHHHHH
LHPNLKVEMRLENRFADLVNEGIDLAIRTGTLPDSSLIARPILNSRWVIVCSPSYLQQYS
CCCCCEEEEEHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHCCCCCEEEEECCHHHHHCC
EPQSAGDLLEHNCLTYTYQESGTDNWLMKQPGSNKIYELQVSGNLSANNARAIRKAVIAG
CCCHHHHHHHCCCEEEEECCCCCCCCEEECCCCCCEEEEEECCCCCCCHHHHHHHHHHHC
YGIAMVPRCMVYEDLQEGAMVEVLSGHCGKVLGIYAVYPYTRNLPLKTRLLIEHIITSYQ
CCHHHHHHHHHHHHHHCCHHHHHHHCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHH
NISHYF
HHHCCC
>Mature Secondary Structure
MLPTHEYANDLILFALIVDCGSFSKAAETAGITSSVVSKRIGRLEKSLGARLLYRTTRSL
CCCCHHHHHHHHHHHHHHHCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCEE
TLTENGQSLYRQAKEISAKTQEALNVISEHSDELTGIIRMSVPTISGELLLSESVAEFCA
EEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHEEEEEEECCCCCCHHHHHHHHHHHHH
LHPNLKVEMRLENRFADLVNEGIDLAIRTGTLPDSSLIARPILNSRWVIVCSPSYLQQYS
CCCCCEEEEEHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHCCCCCEEEEECCHHHHHCC
EPQSAGDLLEHNCLTYTYQESGTDNWLMKQPGSNKIYELQVSGNLSANNARAIRKAVIAG
CCCHHHHHHHCCCEEEEECCCCCCCCEEECCCCCCEEEEEECCCCCCCHHHHHHHHHHHC
YGIAMVPRCMVYEDLQEGAMVEVLSGHCGKVLGIYAVYPYTRNLPLKTRLLIEHIITSYQ
CCHHHHHHHHHHHHHHCCHHHHHHHCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHH
NISHYF
HHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503 [H]