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The map label for this gene is ygdK [H]

Identifier: 157372043

GI number: 157372043

Start: 4208058

End: 4208492

Strand: Direct

Name: ygdK [H]

Synonym: Spro_3808

Alternate gene names: 157372043

Gene position: 4208058-4208492 (Clockwise)

Preceding gene: 157372042

Following gene: 157372047

Centisome position: 77.23

GC content: 57.93

Gene sequence:

>435_bases
ATGCTTGCCCCCCATCCCTTTGGCCATGAAATCACCGCCGAAGCGCTGATCGAGAAATTTACCGAGCTGAAACAATGGGA
AGATCGTTATCGCCAACTGATCATGCTGGCGAAACAATTGCCGCCATTGCCAGAGGCATTACGCGCAGCAGAAATGGAGT
TGAGCGGCTGTGAGAATCGGGTCTGGCTGGGGCATCAGTTACTGGCGGACGGCACGCTGCACTTTTATGGCGACAGCGAA
GGCCGTATCGTGCGCGGTCTGTTGGCGGTACTGCTAACGGCGGTAGAAGGAAAAACGCCGCAGCAGATAGCGGCGATGGA
TCCCCTGGCGCTGTTTGATCTACTGGCGTTACGTGCTCAACTCAGTGCCACCCGCGCCAGCGGGCTGGCAGCACTGGCTG
CTGCCGTGAAAGAAATGGCCGCTAGCTACGCCTGA

Upstream 100 bases:

>100_bases
CTTTGCGCCATACAACACGCGGGAAGACGTCGATACCCTGGTAACCGCCCTGCACAACGCCATCGACCTGTTGGCCGATT
AAATGAACCCCGGAGACGCT

Downstream 100 bases:

>100_bases
CGCGCGGCTTTCGCCACCATCTTCTTCAGCGCATGGGAAACGGCGACAAAACCAAAGGTAGCGGTAACCATGGTTGCCGC
GCCAAATCCCGCGCTGCAAT

Product: Fe-S metabolism associated SufE

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 144; Mature: 144

Protein sequence:

>144_residues
MLAPHPFGHEITAEALIEKFTELKQWEDRYRQLIMLAKQLPPLPEALRAAEMELSGCENRVWLGHQLLADGTLHFYGDSE
GRIVRGLLAVLLTAVEGKTPQQIAAMDPLALFDLLALRAQLSATRASGLAALAAAVKEMAASYA

Sequences:

>Translated_144_residues
MLAPHPFGHEITAEALIEKFTELKQWEDRYRQLIMLAKQLPPLPEALRAAEMELSGCENRVWLGHQLLADGTLHFYGDSE
GRIVRGLLAVLLTAVEGKTPQQIAAMDPLALFDLLALRAQLSATRASGLAALAAAVKEMAASYA
>Mature_144_residues
MLAPHPFGHEITAEALIEKFTELKQWEDRYRQLIMLAKQLPPLPEALRAAEMELSGCENRVWLGHQLLADGTLHFYGDSE
GRIVRGLLAVLLTAVEGKTPQQIAAMDPLALFDLLALRAQLSATRASGLAALAAAVKEMAASYA

Specific function: Unknown

COG id: COG2166

COG function: function code R; SufE protein probably involved in Fe-S center assembly

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sufE family [H]

Homologues:

Organism=Escherichia coli, GI1789176, Length=135, Percent_Identity=64.4444444444444, Blast_Score=183, Evalue=4e-48,
Organism=Escherichia coli, GI1787969, Length=119, Percent_Identity=33.6134453781513, Blast_Score=83, Evalue=6e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017763
- InterPro:   IPR003808 [H]

Pfam domain/function: PF02657 SufE [H]

EC number: NA

Molecular weight: Translated: 15705; Mature: 15705

Theoretical pI: Translated: 5.61; Mature: 5.61

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLAPHPFGHEITAEALIEKFTELKQWEDRYRQLIMLAKQLPPLPEALRAAEMELSGCENR
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCC
VWLGHQLLADGTLHFYGDSEGRIVRGLLAVLLTAVEGKTPQQIAAMDPLALFDLLALRAQ
HHHHHHHHHCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCHHHHHCCHHHHHHHHHHHHH
LSATRASGLAALAAAVKEMAASYA
HHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MLAPHPFGHEITAEALIEKFTELKQWEDRYRQLIMLAKQLPPLPEALRAAEMELSGCENR
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCC
VWLGHQLLADGTLHFYGDSEGRIVRGLLAVLLTAVEGKTPQQIAAMDPLALFDLLALRAQ
HHHHHHHHHCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCHHHHHCCHHHHHHHHHHHHH
LSATRASGLAALAAAVKEMAASYA
HHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]