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The map label for this gene is ygdH [H]

Identifier: 157372036

GI number: 157372036

Start: 4201364

End: 4202728

Strand: Direct

Name: ygdH [H]

Synonym: Spro_3801

Alternate gene names: 157372036

Gene position: 4201364-4202728 (Clockwise)

Preceding gene: 157372035

Following gene: 157372037

Centisome position: 77.11

GC content: 57.14

Gene sequence:

>1365_bases
TTGATTACACACATCAGCCCGCTTGGCTCTATGGATTTGCTGTCGCAGCTGGAAGTAGACATGCTGAAGCGTACCGCCAG
CAGCGATCTTTACCGTTTGTTCCGCAACTGTTCGCTGGCCGTCCTGAACTCCGGCAGCCAAACCGACAACAGCAAACAGC
TGCTGTCACGCTACGAAACCTTTGACATTAACGTCCTGCGCCGTGAGCGCGGGGTCAAACTTGAACTGGTGAATCCACCG
GAAGACGCCTTTGTCGACGGGCGAATCATCCGTTCGCTGCAGGCCAACCTGTTTGCCGTGCTGCGCGATATCCTGTTCGT
TCACGGGCAGATCGACAGCGCCGGCCGTTTCCAGCATCTGAATCTGGAAAACTCGGCCCACATTACCAATCTGGTGTTCT
CTATCCTGCGCAACGCCCGTGCGCTGCACCTTGATGAAGATCCCAATCTGGTGGTGTGCTGGGGGGGGCACTCGATCAAC
GAAAACGAATACCTCTACGCACGTAAGGTCGGAAGCCAACTGGGCCTGCGCGAGCTGAATATCTGTACCGGCTGTGGGCC
GGGTGCCATGGAGGCACCGATGAAAGGCGCGGCCGTAGGCCATGCGCAACAGCGCTACCACAATAGCCGCTTTATCGGCA
TGACCGAACCGTCGATCATCGCCGCAGAGCCACCCAACCCGTTGGTCAATGAGCTGGTGATCATGCCGGACATTGAAAAG
CGCCTGGAGGCCTTCGTCCGTATCGCCCACGGCATCATCATCTTCCCGGGCGGTGTCGGCACGGCAGAAGAGCTGCTTTA
TCTACTGGGTATCCTGATGAACCCGGAGAACAGCGAACAGGTGTTGCCGCTGATCCTCACCGGGCCGAAAGAGAGCGCCA
ACTACTTCCAGGTGCTGGATGAGTTCATCATGAACACGCTGGGTGACGAAGCGCGCCGTCACTACACCATCATCATCGAC
GATCCGGCCGAAGTCGCACGTCAGATGAAAAAAGCCATGCCGCTGGTGAAAGAGAACCGTCGTAATACCGGCGATGCCTA
CAGCTTTAACTGGTCGATCCGCATTGCGCCGGATTTGCAGCTGCCGTTTGAGCCAAGCCATGAGAATATGGCCAATCTCA
ACCTGTATCCCGACCAGCCGGCCGAACAGTTGGCTGCCGCGCTGCGCCGCGCGTTTTCCGGCATCGTCGCCGGTAACGTG
AAGGAAAATGGCATTCATGCCATCGAACAGTTTGGGCCGTACAAGCTGCACGGCGAACCGCAGATGATGAAGCAAATGGA
CAGTCTGCTGCAGGGCTTTGTCGCTCAGCACCGGATGAAACTGCCAGGCACCGCTTATGTGCCCTGTTACGAAATAGTCG
CTTAA

Upstream 100 bases:

>100_bases
TGGCAAACGATGACGTTGCCGCCGTGCGCTAACTATAACGAGATGCTGTTCTGCTGCGTATGGATTACTACTGCCCCTTT
CCGGGTGCAAAGGAGTTACC

Downstream 100 bases:

>100_bases
TGAGCAATCCGGGGCGGCCTGACAGCCGCCCTTCTTTTTTCTGACCTTGTAAGCCCATGATGATACACCTACTGATTGTC
GATGCCCTCAACCTGATCCG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 454; Mature: 454

Protein sequence:

>454_residues
MITHISPLGSMDLLSQLEVDMLKRTASSDLYRLFRNCSLAVLNSGSQTDNSKQLLSRYETFDINVLRRERGVKLELVNPP
EDAFVDGRIIRSLQANLFAVLRDILFVHGQIDSAGRFQHLNLENSAHITNLVFSILRNARALHLDEDPNLVVCWGGHSIN
ENEYLYARKVGSQLGLRELNICTGCGPGAMEAPMKGAAVGHAQQRYHNSRFIGMTEPSIIAAEPPNPLVNELVIMPDIEK
RLEAFVRIAHGIIIFPGGVGTAEELLYLLGILMNPENSEQVLPLILTGPKESANYFQVLDEFIMNTLGDEARRHYTIIID
DPAEVARQMKKAMPLVKENRRNTGDAYSFNWSIRIAPDLQLPFEPSHENMANLNLYPDQPAEQLAAALRRAFSGIVAGNV
KENGIHAIEQFGPYKLHGEPQMMKQMDSLLQGFVAQHRMKLPGTAYVPCYEIVA

Sequences:

>Translated_454_residues
MITHISPLGSMDLLSQLEVDMLKRTASSDLYRLFRNCSLAVLNSGSQTDNSKQLLSRYETFDINVLRRERGVKLELVNPP
EDAFVDGRIIRSLQANLFAVLRDILFVHGQIDSAGRFQHLNLENSAHITNLVFSILRNARALHLDEDPNLVVCWGGHSIN
ENEYLYARKVGSQLGLRELNICTGCGPGAMEAPMKGAAVGHAQQRYHNSRFIGMTEPSIIAAEPPNPLVNELVIMPDIEK
RLEAFVRIAHGIIIFPGGVGTAEELLYLLGILMNPENSEQVLPLILTGPKESANYFQVLDEFIMNTLGDEARRHYTIIID
DPAEVARQMKKAMPLVKENRRNTGDAYSFNWSIRIAPDLQLPFEPSHENMANLNLYPDQPAEQLAAALRRAFSGIVAGNV
KENGIHAIEQFGPYKLHGEPQMMKQMDSLLQGFVAQHRMKLPGTAYVPCYEIVA
>Mature_454_residues
MITHISPLGSMDLLSQLEVDMLKRTASSDLYRLFRNCSLAVLNSGSQTDNSKQLLSRYETFDINVLRRERGVKLELVNPP
EDAFVDGRIIRSLQANLFAVLRDILFVHGQIDSAGRFQHLNLENSAHITNLVFSILRNARALHLDEDPNLVVCWGGHSIN
ENEYLYARKVGSQLGLRELNICTGCGPGAMEAPMKGAAVGHAQQRYHNSRFIGMTEPSIIAAEPPNPLVNELVIMPDIEK
RLEAFVRIAHGIIIFPGGVGTAEELLYLLGILMNPENSEQVLPLILTGPKESANYFQVLDEFIMNTLGDEARRHYTIIID
DPAEVARQMKKAMPLVKENRRNTGDAYSFNWSIRIAPDLQLPFEPSHENMANLNLYPDQPAEQLAAALRRAFSGIVAGNV
KENGIHAIEQFGPYKLHGEPQMMKQMDSLLQGFVAQHRMKLPGTAYVPCYEIVA

Specific function: Unknown

COG id: COG1611

COG function: function code R; Predicted Rossmann fold nucleotide-binding protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the LOG family [H]

Homologues:

Organism=Escherichia coli, GI1789159, Length=454, Percent_Identity=86.1233480176212, Blast_Score=822, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR021826
- InterPro:   IPR005269 [H]

Pfam domain/function: PF11892 DUF3412; PF03641 Lysine_decarbox [H]

EC number: NA

Molecular weight: Translated: 50704; Mature: 50704

Theoretical pI: Translated: 6.16; Mature: 6.16

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MITHISPLGSMDLLSQLEVDMLKRTASSDLYRLFRNCSLAVLNSGSQTDNSKQLLSRYET
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCHHHHHHHHHH
FDINVLRRERGVKLELVNPPEDAFVDGRIIRSLQANLFAVLRDILFVHGQIDSAGRFQHL
CCEEEEECCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEE
NLENSAHITNLVFSILRNARALHLDEDPNLVVCWGGHSINENEYLYARKVGSQLGLRELN
CCCCCHHHHHHHHHHHHCCCEEEECCCCCEEEEECCCCCCCCCEEHHHHHHHHCCCCCEE
ICTGCGPGAMEAPMKGAAVGHAQQRYHNSRFIGMTEPSIIAAEPPNPLVNELVIMPDIEK
EECCCCCCCCCCCCCCCHHHHHHHHHCCCEEEECCCCCEEEECCCCHHHHCEEECCCHHH
RLEAFVRIAHGIIIFPGGVGTAEELLYLLGILMNPENSEQVLPLILTGPKESANYFQVLD
HHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCHHHHHHHH
EFIMNTLGDEARRHYTIIIDDPAEVARQMKKAMPLVKENRRNTGDAYSFNWSIRIAPDLQ
HHHHHHHCHHHHCEEEEEEECHHHHHHHHHHHCCHHHHCCCCCCCEEEEEEEEEEECCCC
LPFEPSHENMANLNLYPDQPAEQLAAALRRAFSGIVAGNVKENGIHAIEQFGPYKLHGEP
CCCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCEEECCCH
QMMKQMDSLLQGFVAQHRMKLPGTAYVPCYEIVA
HHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHCC
>Mature Secondary Structure
MITHISPLGSMDLLSQLEVDMLKRTASSDLYRLFRNCSLAVLNSGSQTDNSKQLLSRYET
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCHHHHHHHHHH
FDINVLRRERGVKLELVNPPEDAFVDGRIIRSLQANLFAVLRDILFVHGQIDSAGRFQHL
CCEEEEECCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEE
NLENSAHITNLVFSILRNARALHLDEDPNLVVCWGGHSINENEYLYARKVGSQLGLRELN
CCCCCHHHHHHHHHHHHCCCEEEECCCCCEEEEECCCCCCCCCEEHHHHHHHHCCCCCEE
ICTGCGPGAMEAPMKGAAVGHAQQRYHNSRFIGMTEPSIIAAEPPNPLVNELVIMPDIEK
EECCCCCCCCCCCCCCCHHHHHHHHHCCCEEEECCCCCEEEECCCCHHHHCEEECCCHHH
RLEAFVRIAHGIIIFPGGVGTAEELLYLLGILMNPENSEQVLPLILTGPKESANYFQVLD
HHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCHHHHHHHH
EFIMNTLGDEARRHYTIIIDDPAEVARQMKKAMPLVKENRRNTGDAYSFNWSIRIAPDLQ
HHHHHHHCHHHHCEEEEEEECHHHHHHHHHHHCCHHHHCCCCCCCEEEEEEEEEEECCCC
LPFEPSHENMANLNLYPDQPAEQLAAALRRAFSGIVAGNVKENGIHAIEQFGPYKLHGEP
CCCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCEEECCCH
QMMKQMDSLLQGFVAQHRMKLPGTAYVPCYEIVA
HHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]