| Definition | Serratia proteamaculans 568 chromosome, complete genome. |
|---|---|
| Accession | NC_009832 |
| Length | 5,448,853 |
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The map label for this gene is ybjJ [C]
Identifier: 157371502
GI number: 157371502
Start: 3601135
End: 3602289
Strand: Direct
Name: ybjJ [C]
Synonym: Spro_3265
Alternate gene names: 157371502
Gene position: 3601135-3602289 (Clockwise)
Preceding gene: 157371499
Following gene: 157371503
Centisome position: 66.09
GC content: 59.13
Gene sequence:
>1155_bases ATGACATCCACCTTGTGTAATGAACAGCAGAAACCCGGCGTCCCGGCACAGATCGCAACGCGTTTGGCCTTTTTTGTCGC CGGCTTCGGCATGGCTGCCTGGGCTCCCCTGGTCCCTTTCGCCAAAGCGCGTATCGGCATTGATGACGGCTCCCTGGGTC TGCTGCTGCTGTGTATTGGCGCAGGTTCGATGTTGGCGATGCCGCTTACCGGCTTCCTGACCGGCAGGTTGGGCTGTCGC CCGGTGATCCTGCTGGCCGGGCTGGCACTGTGTATTGATTTACCCCTGCTGGTCCTGATGGACACCACCACCGGTATGGC ACTGGCCCTGCTGTTGTTTGGTGCGGCAATCGGCATGATCGATGTGTCGATGAACATACAGGCGGTAGTGGTCGAGCGCG CCAGCGGCAAGGCAATGATGTCCGGCTTTCACGGTTTCTTCAGCGTTGGCGGCATTGCCGGTGCCGGCGGTGTTAGTGTG ATGCTGTGGCTGGGGCTGTCTCCTTTGCTGGCAACATGGGTCGCCGTATTGACCATTGCCGCATTGCTGATGCTGGCCAG TCGCAATTTGCTGCGTGAAAGCGGCGGTGACGAAGGTGGCCCGATGTTTGTGCTGCCACGCGGTTGGGTGATGTTCATTG GCATCCTGTGCTTCATTATGTTCCTGGCAGAAGGTTCGATGCTCGACTGGAGCGCCCTGTTTCTCACCACCCTGCGAGGC GTTGACCACAGCCAGGCCGGATTGGGCTATGCGCTGTTCTCCATCACCATGACCATCGGCAGATTGAACGGCGATTGGGT GGTAAACCGGCTGGGCAGATATAAAGTATTGCTGCTGGGTAGCCTGTGTGCGGCCATTGGCCTGAGTCTGGCCATTATCT TCAACAACGCCATGGTTTCACTGATTGGTTTTATGCTGGTGGGCCTCGGCGCTTCCAACGTGGTACCGATCCTGTTCAGT GCTGCCGGCAACCAGCAGGATATGCCGGCAAATCTGGCCATCGCATCAGTGACCACCGTCGGCTACGCCGGCATCCTCGC CGGACCGGCGCTGATTGGCTTTATCGCTCAGTTCTCCAGCCTGACGGCGGCATTTGCCTGCGTTGCAGTTTTACTCCTGG TGGTCACCGCCAGCGCCCGGGCGATAACCCGTTGA
Upstream 100 bases:
>100_bases GCGCGGGCGAGCGCAAATCCTTTCGACCCGGATCGCGGATTGTGATAAAAACACTCCATAACTTTCAGCCCGCATTTCCA CAATAGATCCTGATTCCCAC
Downstream 100 bases:
>100_bases TTCAGGAATGCGCAGTCAACTATGCAAAATAAACAACTGACCATCAGCTCAAGCAATATTACTCGCTGCTTCCTGCTGTT TTCCGTGCTGCTGACGATTG
Product: major facilitator transporter
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 384; Mature: 383
Protein sequence:
>384_residues MTSTLCNEQQKPGVPAQIATRLAFFVAGFGMAAWAPLVPFAKARIGIDDGSLGLLLLCIGAGSMLAMPLTGFLTGRLGCR PVILLAGLALCIDLPLLVLMDTTTGMALALLLFGAAIGMIDVSMNIQAVVVERASGKAMMSGFHGFFSVGGIAGAGGVSV MLWLGLSPLLATWVAVLTIAALLMLASRNLLRESGGDEGGPMFVLPRGWVMFIGILCFIMFLAEGSMLDWSALFLTTLRG VDHSQAGLGYALFSITMTIGRLNGDWVVNRLGRYKVLLLGSLCAAIGLSLAIIFNNAMVSLIGFMLVGLGASNVVPILFS AAGNQQDMPANLAIASVTTVGYAGILAGPALIGFIAQFSSLTAAFACVAVLLLVVTASARAITR
Sequences:
>Translated_384_residues MTSTLCNEQQKPGVPAQIATRLAFFVAGFGMAAWAPLVPFAKARIGIDDGSLGLLLLCIGAGSMLAMPLTGFLTGRLGCR PVILLAGLALCIDLPLLVLMDTTTGMALALLLFGAAIGMIDVSMNIQAVVVERASGKAMMSGFHGFFSVGGIAGAGGVSV MLWLGLSPLLATWVAVLTIAALLMLASRNLLRESGGDEGGPMFVLPRGWVMFIGILCFIMFLAEGSMLDWSALFLTTLRG VDHSQAGLGYALFSITMTIGRLNGDWVVNRLGRYKVLLLGSLCAAIGLSLAIIFNNAMVSLIGFMLVGLGASNVVPILFS AAGNQQDMPANLAIASVTTVGYAGILAGPALIGFIAQFSSLTAAFACVAVLLLVVTASARAITR >Mature_383_residues TSTLCNEQQKPGVPAQIATRLAFFVAGFGMAAWAPLVPFAKARIGIDDGSLGLLLLCIGAGSMLAMPLTGFLTGRLGCRP VILLAGLALCIDLPLLVLMDTTTGMALALLLFGAAIGMIDVSMNIQAVVVERASGKAMMSGFHGFFSVGGIAGAGGVSVM LWLGLSPLLATWVAVLTIAALLMLASRNLLRESGGDEGGPMFVLPRGWVMFIGILCFIMFLAEGSMLDWSALFLTTLRGV DHSQAGLGYALFSITMTIGRLNGDWVVNRLGRYKVLLLGSLCAAIGLSLAIIFNNAMVSLIGFMLVGLGASNVVPILFSA AGNQQDMPANLAIASVTTVGYAGILAGPALIGFIAQFSSLTAAFACVAVLLLVVTASARAITR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Non Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the major facilitator superfamily [H]
Homologues:
Organism=Escherichia coli, GI1787068, Length=372, Percent_Identity=30.3763440860215, Blast_Score=140, Evalue=2e-34,
Paralogues:
None
Copy number: 10-20 Molecules/Cell [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR020846 - InterPro: IPR011701 - InterPro: IPR016196 [H]
Pfam domain/function: PF07690 MFS_1 [H]
EC number: NA
Molecular weight: Translated: 39694; Mature: 39563
Theoretical pI: Translated: 8.28; Mature: 8.28
Prosite motif: PS50850 MFS
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 5.2 %Met (Translated Protein) 7.0 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 5.0 %Met (Mature Protein) 6.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTSTLCNEQQKPGVPAQIATRLAFFVAGFGMAAWAPLVPFAKARIGIDDGSLGLLLLCIG CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCHHHHHHHHC AGSMLAMPLTGFLTGRLGCRPVILLAGLALCIDLPLLVLMDTTTGMALALLLFGAAIGMI CCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHE DVSMNIQAVVVERASGKAMMSGFHGFFSVGGIAGAGGVSVMLWLGLSPLLATWVAVLTIA EECCCEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHH ALLMLASRNLLRESGGDEGGPMFVLPRGWVMFIGILCFIMFLAEGSMLDWSALFLTTLRG HHHHHHHHHHHHHCCCCCCCCEEEECCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHC VDHSQAGLGYALFSITMTIGRLNGDWVVNRLGRYKVLLLGSLCAAIGLSLAIIFNNAMVS CCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHH LIGFMLVGLGASNVVPILFSAAGNQQDMPANLAIASVTTVGYAGILAGPALIGFIAQFSS HHHHHHHHCCCCCHHHHHEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LTAAFACVAVLLLVVTASARAITR HHHHHHHHHHHHHHHHHCHHHHCC >Mature Secondary Structure TSTLCNEQQKPGVPAQIATRLAFFVAGFGMAAWAPLVPFAKARIGIDDGSLGLLLLCIG CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCHHHHHHHHC AGSMLAMPLTGFLTGRLGCRPVILLAGLALCIDLPLLVLMDTTTGMALALLLFGAAIGMI CCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHE DVSMNIQAVVVERASGKAMMSGFHGFFSVGGIAGAGGVSVMLWLGLSPLLATWVAVLTIA EECCCEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHH ALLMLASRNLLRESGGDEGGPMFVLPRGWVMFIGILCFIMFLAEGSMLDWSALFLTTLRG HHHHHHHHHHHHHCCCCCCCCEEEECCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHC VDHSQAGLGYALFSITMTIGRLNGDWVVNRLGRYKVLLLGSLCAAIGLSLAIIFNNAMVS CCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHH LIGFMLVGLGASNVVPILFSAAGNQQDMPANLAIASVTTVGYAGILAGPALIGFIAQFSS HHHHHHHHCCCCCHHHHHEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LTAAFACVAVLLLVVTASARAITR HHHHHHHHHHHHHHHHHCHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 11586360; 12142430 [H]