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The map label for this gene is ycdO [H]

Identifier: 157371168

GI number: 157371168

Start: 3225889

End: 3227025

Strand: Reverse

Name: ycdO [H]

Synonym: Spro_2928

Alternate gene names: 157371168

Gene position: 3227025-3225889 (Counterclockwise)

Preceding gene: 157371169

Following gene: 157371167

Centisome position: 59.22

GC content: 55.85

Gene sequence:

>1137_bases
ATGTCTACTCCATTATTCCGCCGCAAGGCGTTGCACGCAGCATTACTGGCTCTGCCGGCGTTCGCGCTAAGCATCAACGC
TCAGGCGGCGGACGTGCCGCAGGTGAAAATTACCGTTAACGACAAACAGTGTGAGCCGATGCAGTTGACGGTAGCGGCCG
GTAAAACCCAGTTTGTGGTGCACAACACCAGCCAGAAAAACGTCGAATGGGAAATCCTCAAAGGGGTGATGGTGGTGGAA
GAGCGTGAGAATATCGCGCCGGGCTTCACCCAGAAGATGACCGCCAACCTGGAGGCGGGTGAATACGACATGACCTGCGG
ACTGCTCAGCAATCCGAAGGGCAAGCTGACCGTGACCGCTGCCGCAGGTGCCACCACCGACGGCAAACCGAATGCGATGG
ATTTGGTCGGGCCGATTGCCGAATACAAGGTTTATGTGACCAAAGAAGTGGAAGGCCTGGTTAAACAGACCAAGCGGTTC
ACCGATGCGGTGAAAGCCGGCAACGTGGCCGAGGCGCGTAAACTCTATGCGCCGACGCGCCAGCACTACGAGCGCATTGA
ACCGATCGCCGAACTGTTCTCCGACCTGGACGGCAGCATCGACGCCCGTGAAGACGATTACGAGAAGAAAGCGGAAGATC
CGAAGTTCACCGGTTTCCACCGCCTGGAAAAAGCGCTGTTTGCCGATAACACCACCAAAGACATGAGCAAATACGCTGAC
CAACTGTACAACGACACCGTCGAGCTGCAAAAACGCGTCACCGATCTGACCTTCCCGCCGAGCAAAGTTGTCGGCGGGGC
GGCCGGTCTGATCGAAGAAGTCGCGGCGAGCAAAATCAGCGGTGAAGAAGACCGTTACAGCCGTACCGACCTGTGGGACT
TCCAGGCTAACGTCGACGGCGCGCAGAAAATCGTTAACCTGCTGCGTCCGTTGCTGGTCAAGGCCAACAAACCGCTGCTG
GACAAGATCGACGCCAACTTTAAAACCGTTGATACCATTTTGGCGAAGTACAAAACCAAAGACGGCTATGAGTCTTATGA
GAAGTTAACTGATGCCGATCGCAATGCCATGAAAGGGCCAATCACCACTCTGGCGGAAGACCTTTCACAACTGCGTGGCG
TTCTGGGTCTGGATTGA

Upstream 100 bases:

>100_bases
GATCCCAACGCTGATTTTCTTTTTCCTGCCGCAGCGTGCGGAACCGGCAGCGGTTTCGGCGCAACGTAAAATCAATCATT
AATTTAAATAGGGAATCTGT

Downstream 100 bases:

>100_bases
GGCAAGCATAATGAGTAACAAGATCGGCCCGGGAAACGGGCCGCATCCACAGGGCGCGGCGTCACCGTCGCGCCGTCGTT
TGTTGCAGGGGTTGGGGCTG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 378; Mature: 377

Protein sequence:

>378_residues
MSTPLFRRKALHAALLALPAFALSINAQAADVPQVKITVNDKQCEPMQLTVAAGKTQFVVHNTSQKNVEWEILKGVMVVE
ERENIAPGFTQKMTANLEAGEYDMTCGLLSNPKGKLTVTAAAGATTDGKPNAMDLVGPIAEYKVYVTKEVEGLVKQTKRF
TDAVKAGNVAEARKLYAPTRQHYERIEPIAELFSDLDGSIDAREDDYEKKAEDPKFTGFHRLEKALFADNTTKDMSKYAD
QLYNDTVELQKRVTDLTFPPSKVVGGAAGLIEEVAASKISGEEDRYSRTDLWDFQANVDGAQKIVNLLRPLLVKANKPLL
DKIDANFKTVDTILAKYKTKDGYESYEKLTDADRNAMKGPITTLAEDLSQLRGVLGLD

Sequences:

>Translated_378_residues
MSTPLFRRKALHAALLALPAFALSINAQAADVPQVKITVNDKQCEPMQLTVAAGKTQFVVHNTSQKNVEWEILKGVMVVE
ERENIAPGFTQKMTANLEAGEYDMTCGLLSNPKGKLTVTAAAGATTDGKPNAMDLVGPIAEYKVYVTKEVEGLVKQTKRF
TDAVKAGNVAEARKLYAPTRQHYERIEPIAELFSDLDGSIDAREDDYEKKAEDPKFTGFHRLEKALFADNTTKDMSKYAD
QLYNDTVELQKRVTDLTFPPSKVVGGAAGLIEEVAASKISGEEDRYSRTDLWDFQANVDGAQKIVNLLRPLLVKANKPLL
DKIDANFKTVDTILAKYKTKDGYESYEKLTDADRNAMKGPITTLAEDLSQLRGVLGLD
>Mature_377_residues
STPLFRRKALHAALLALPAFALSINAQAADVPQVKITVNDKQCEPMQLTVAAGKTQFVVHNTSQKNVEWEILKGVMVVEE
RENIAPGFTQKMTANLEAGEYDMTCGLLSNPKGKLTVTAAAGATTDGKPNAMDLVGPIAEYKVYVTKEVEGLVKQTKRFT
DAVKAGNVAEARKLYAPTRQHYERIEPIAELFSDLDGSIDAREDDYEKKAEDPKFTGFHRLEKALFADNTTKDMSKYADQ
LYNDTVELQKRVTDLTFPPSKVVGGAAGLIEEVAASKISGEEDRYSRTDLWDFQANVDGAQKIVNLLRPLLVKANKPLLD
KIDANFKTVDTILAKYKTKDGYESYEKLTDADRNAMKGPITTLAEDLSQLRGVLGLD

Specific function: Unknown

COG id: COG2822

COG function: function code P; Predicted periplasmic lipoprotein involved in iron transport

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0409 family [H]

Homologues:

Organism=Escherichia coli, GI1787254, Length=373, Percent_Identity=74.2627345844504, Blast_Score=571, Evalue=1e-164,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008972
- InterPro:   IPR018976 [H]

Pfam domain/function: PF09375 Peptidase_M75 [H]

EC number: NA

Molecular weight: Translated: 41668; Mature: 41537

Theoretical pI: Translated: 5.38; Mature: 5.38

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTPLFRRKALHAALLALPAFALSINAQAADVPQVKITVNDKQCEPMQLTVAAGKTQFVV
CCCCHHHHHHHHHHHHHHHHHHHEECCCCCCCCEEEEEECCCCCCCEEEEEECCCEEEEE
HNTSQKNVEWEILKGVMVVEERENIAPGFTQKMTANLEAGEYDMTCGLLSNPKGKLTVTA
ECCCCCCCHHHHHHCCCEEECCCCCCCCCHHHHHCCCCCCCCEEEECCCCCCCCCEEEEE
AAGATTDGKPNAMDLVGPIAEYKVYVTKEVEGLVKQTKRFTDAVKAGNVAEARKLYAPTR
ECCCCCCCCCCHHHHHCCHHHHEEEEHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCHH
QHYERIEPIAELFSDLDGSIDAREDDYEKKAEDPKFTGFHRLEKALFADNTTKDMSKYAD
HHHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHH
QLYNDTVELQKRVTDLTFPPSKVVGGAAGLIEEVAASKISGEEDRYSRTDLWDFQANVDG
HHHHHHHHHHHHHHHCCCCHHHHHCHHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCCH
AQKIVNLLRPLLVKANKPLLDKIDANFKTVDTILAKYKTKDGYESYEKLTDADRNAMKGP
HHHHHHHHHHHHHHCCCCHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCH
ITTLAEDLSQLRGVLGLD
HHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
STPLFRRKALHAALLALPAFALSINAQAADVPQVKITVNDKQCEPMQLTVAAGKTQFVV
CCCHHHHHHHHHHHHHHHHHHHEECCCCCCCCEEEEEECCCCCCCEEEEEECCCEEEEE
HNTSQKNVEWEILKGVMVVEERENIAPGFTQKMTANLEAGEYDMTCGLLSNPKGKLTVTA
ECCCCCCCHHHHHHCCCEEECCCCCCCCCHHHHHCCCCCCCCEEEECCCCCCCCCEEEEE
AAGATTDGKPNAMDLVGPIAEYKVYVTKEVEGLVKQTKRFTDAVKAGNVAEARKLYAPTR
ECCCCCCCCCCHHHHHCCHHHHEEEEHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCHH
QHYERIEPIAELFSDLDGSIDAREDDYEKKAEDPKFTGFHRLEKALFADNTTKDMSKYAD
HHHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHH
QLYNDTVELQKRVTDLTFPPSKVVGGAAGLIEEVAASKISGEEDRYSRTDLWDFQANVDG
HHHHHHHHHHHHHHHCCCCHHHHHCHHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCCH
AQKIVNLLRPLLVKANKPLLDKIDANFKTVDTILAKYKTKDGYESYEKLTDADRNAMKGP
HHHHHHHHHHHHHHCCCCHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCH
ITTLAEDLSQLRGVLGLD
HHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA