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The map label for this gene is ybjS [H]

Identifier: 157371108

GI number: 157371108

Start: 3147773

End: 3148789

Strand: Reverse

Name: ybjS [H]

Synonym: Spro_2868

Alternate gene names: 157371108

Gene position: 3148789-3147773 (Counterclockwise)

Preceding gene: 157371109

Following gene: 157371107

Centisome position: 57.79

GC content: 60.57

Gene sequence:

>1017_bases
ATGAGGGTGTTGGTCACCGGAGCCACCAGCGGGCTGGGGCGTAACGCGGCACAGTGGCTGTTGGAAGCGGGCCATCAGGT
TCATGCCACCGGGCGTGACAGTCGCGCCGGGCAGGAACTGCGTGAGTTGGGTGCCGAGTTCAGCCCGCTGGATTTGGCGC
AGGCCACGGCAGAACAGTGCCGTCAACTGATGGCCAACTGTGATTGGGTCTGGCACTGCGCAGCAAAATCTTCACCCTGG
GGAAGCCAGGTAGAGTTCTATCAGGCCAACGAGGCCGCGACCGAAAAACTGGCGCAGGCGGCAGGGGACTGTGGCGTCCG
GCGTTTTGTTCACATCTCCACGCCGGCAATCTATTTCGATTTTCGGCCGCACCAGAATATTGACGAAGGCTATCGCGCCA
GGCGTTTCGCCAACCATTACGCCGCCAGCAAATATGCCGCCGAGCAGCGGTTGCAGGCACTGGTACCGCGTTACCCGCAA
ACGACCTATATTATTCTACGGCCCAGAGGGTTGTTCGGCCCACACGACCGGGTGATTGTACCGCGGGTGCTGCAACAGTT
GGATCGCGATCGCGGGCTATTACGGTTGCCTGGCGGTGGCAAAGCGGTATTGGATCTGACCTTTGTACTTAACGTGGTGC
ATGCGATGGATCTGGCCAGTCGCCAGCACGGGTTGCCATCCGGCGCCGCCTACAACATCACTAATCACCAGCCGCAGCGG
CTGGCGGAGATGCTGGATTCGCTGCTGCGTCAGCAATTGGGGCTGCGCTACCGGTTGCAGGCGGTGCCTTATTCCTTGCT
GTATGCTCTGGCGGGCGGGCTGGAGTTGCTGGCCCGTTTTACCGGCAAAGAGCCCATGCTGACGCGCTATAGCGTGGCGG
CGGTGCATTTCGATATGACGCTGAGCCAAACCCTTGCCGTGGAACAGTTGGGCTATCGGCCACGCTATTCGATGGAAGAG
GGGATCCGCATCACCGGCGAGTGGCTTAAACGGCAAGGAGAGCAGCTCCATGGCTAA

Upstream 100 bases:

>100_bases
TACACGCTGCGGTTACCGGCGGGCGATTTAACCCAGGTAAGCCGGTGATGCTGATTGGCACCGCCGCCGGGCTGTCACTT
GCCGGCATGGTGCTGCTGCC

Downstream 100 bases:

>100_bases
GGTCACTGTTTTTGAGGTGGGGTACTGTACCCATATCGGCTGTATGGCGCTGCGCGGTGCGGGATTCCGGGTGTGCAAAT
TCCCGGCCCGCGCTTATTTG

Product: NAD-dependent epimerase/dehydratase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 338; Mature: 338

Protein sequence:

>338_residues
MRVLVTGATSGLGRNAAQWLLEAGHQVHATGRDSRAGQELRELGAEFSPLDLAQATAEQCRQLMANCDWVWHCAAKSSPW
GSQVEFYQANEAATEKLAQAAGDCGVRRFVHISTPAIYFDFRPHQNIDEGYRARRFANHYAASKYAAEQRLQALVPRYPQ
TTYIILRPRGLFGPHDRVIVPRVLQQLDRDRGLLRLPGGGKAVLDLTFVLNVVHAMDLASRQHGLPSGAAYNITNHQPQR
LAEMLDSLLRQQLGLRYRLQAVPYSLLYALAGGLELLARFTGKEPMLTRYSVAAVHFDMTLSQTLAVEQLGYRPRYSMEE
GIRITGEWLKRQGEQLHG

Sequences:

>Translated_338_residues
MRVLVTGATSGLGRNAAQWLLEAGHQVHATGRDSRAGQELRELGAEFSPLDLAQATAEQCRQLMANCDWVWHCAAKSSPW
GSQVEFYQANEAATEKLAQAAGDCGVRRFVHISTPAIYFDFRPHQNIDEGYRARRFANHYAASKYAAEQRLQALVPRYPQ
TTYIILRPRGLFGPHDRVIVPRVLQQLDRDRGLLRLPGGGKAVLDLTFVLNVVHAMDLASRQHGLPSGAAYNITNHQPQR
LAEMLDSLLRQQLGLRYRLQAVPYSLLYALAGGLELLARFTGKEPMLTRYSVAAVHFDMTLSQTLAVEQLGYRPRYSMEE
GIRITGEWLKRQGEQLHG
>Mature_338_residues
MRVLVTGATSGLGRNAAQWLLEAGHQVHATGRDSRAGQELRELGAEFSPLDLAQATAEQCRQLMANCDWVWHCAAKSSPW
GSQVEFYQANEAATEKLAQAAGDCGVRRFVHISTPAIYFDFRPHQNIDEGYRARRFANHYAASKYAAEQRLQALVPRYPQ
TTYIILRPRGLFGPHDRVIVPRVLQQLDRDRGLLRLPGGGKAVLDLTFVLNVVHAMDLASRQHGLPSGAAYNITNHQPQR
LAEMLDSLLRQQLGLRYRLQAVPYSLLYALAGGLELLARFTGKEPMLTRYSVAAVHFDMTLSQTLAVEQLGYRPRYSMEE
GIRITGEWLKRQGEQLHG

Specific function: Unknown

COG id: COG0451

COG function: function code MG; Nucleoside-diphosphate-sugar epimerases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI193211614, Length=340, Percent_Identity=26.1764705882353, Blast_Score=86, Evalue=5e-17,
Organism=Homo sapiens, GI8393516, Length=340, Percent_Identity=26.1764705882353, Blast_Score=86, Evalue=5e-17,
Organism=Homo sapiens, GI116268111, Length=353, Percent_Identity=24.6458923512748, Blast_Score=71, Evalue=2e-12,
Organism=Homo sapiens, GI310132178, Length=334, Percent_Identity=26.3473053892216, Blast_Score=65, Evalue=6e-11,
Organism=Homo sapiens, GI310113012, Length=334, Percent_Identity=26.3473053892216, Blast_Score=65, Evalue=6e-11,
Organism=Homo sapiens, GI239745448, Length=334, Percent_Identity=26.3473053892216, Blast_Score=65, Evalue=6e-11,
Organism=Escherichia coli, GI87081792, Length=336, Percent_Identity=45.5357142857143, Blast_Score=302, Evalue=2e-83,
Organism=Saccharomyces cerevisiae, GI6321437, Length=292, Percent_Identity=26.027397260274, Blast_Score=80, Evalue=4e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001509
- InterPro:   IPR016040 [H]

Pfam domain/function: PF01370 Epimerase [H]

EC number: NA

Molecular weight: Translated: 37874; Mature: 37874

Theoretical pI: Translated: 9.40; Mature: 9.40

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRVLVTGATSGLGRNAAQWLLEAGHQVHATGRDSRAGQELRELGAEFSPLDLAQATAEQC
CEEEEECCCCCCCHHHHHHHHHCCCEEEECCCCCHHHHHHHHHCCCCCCHHHHHHHHHHH
RQLMANCDWVWHCAAKSSPWGSQVEFYQANEAATEKLAQAAGDCGVRRFVHISTPAIYFD
HHHHHCCCEEEEECCCCCCCCCCEEEEECCHHHHHHHHHHHCCCCHHEEEEECCCEEEEE
FRPHQNIDEGYRARRFANHYAASKYAAEQRLQALVPRYPQTTYIILRPRGLFGPHDRVIV
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCHH
PRVLQQLDRDRGLLRLPGGGKAVLDLTFVLNVVHAMDLASRQHGLPSGAAYNITNHQPQR
HHHHHHHHHCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECCCCCCHHH
LAEMLDSLLRQQLGLRYRLQAVPYSLLYALAGGLELLARFTGKEPMLTRYSVAAVHFDMT
HHHHHHHHHHHHHCCEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHEEEHEEECHH
LSQTLAVEQLGYRPRYSMEEGIRITGEWLKRQGEQLHG
HHHHHHHHHHCCCCCCCHHCCCEEEHHHHHCCCHHCCC
>Mature Secondary Structure
MRVLVTGATSGLGRNAAQWLLEAGHQVHATGRDSRAGQELRELGAEFSPLDLAQATAEQC
CEEEEECCCCCCCHHHHHHHHHCCCEEEECCCCCHHHHHHHHHCCCCCCHHHHHHHHHHH
RQLMANCDWVWHCAAKSSPWGSQVEFYQANEAATEKLAQAAGDCGVRRFVHISTPAIYFD
HHHHHCCCEEEEECCCCCCCCCCEEEEECCHHHHHHHHHHHCCCCHHEEEEECCCEEEEE
FRPHQNIDEGYRARRFANHYAASKYAAEQRLQALVPRYPQTTYIILRPRGLFGPHDRVIV
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCHH
PRVLQQLDRDRGLLRLPGGGKAVLDLTFVLNVVHAMDLASRQHGLPSGAAYNITNHQPQR
HHHHHHHHHCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECCCCCCHHH
LAEMLDSLLRQQLGLRYRLQAVPYSLLYALAGGLELLARFTGKEPMLTRYSVAAVHFDMT
HHHHHHHHHHHHHCCEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHEEEHEEECHH
LSQTLAVEQLGYRPRYSMEEGIRITGEWLKRQGEQLHG
HHHHHHHHHHCCCCCCCHHCCCEEEHHHHHCCCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]