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The map label for this gene is bsdA [H]

Identifier: 157370875

GI number: 157370875

Start: 2899606

End: 2900502

Strand: Reverse

Name: bsdA [H]

Synonym: Spro_2635

Alternate gene names: 157370875

Gene position: 2900502-2899606 (Counterclockwise)

Preceding gene: 157370876

Following gene: 157370868

Centisome position: 53.23

GC content: 57.86

Gene sequence:

>897_bases
ATGGATATTAAGCAACTGATCTACCTGTGTAATCTCGAACGTGAACGCCACTTTGGCCGTGCGGCGCAAGTCAGCTTCGT
CAGCCAGCCGACGTTATCCATGCGGCTGAAAAACCTGGAAAAAGAGCTGGGCGTCTCGTTGATCAATCGCGGCAACAATT
TCGAAGGCTTCACCGCTGAGGGTGAACGAGTGCTGTCGTGGGCGCGTGAGATTGTCTCGGTTTATCAGGGGCTGAAGCTG
GAGGTCGAGTCGCTTAAGCACGGCCTTAGCGGCACGCTGCGCATCGGTGCCGTTCCTCAATGCAGCATTTCGCTGGCGCA
AATGTTAAAGGCGGTCAGCGAGCGCTTCCCACAGTTGGACTACCGGGTGTCCGTGTTGAGCGCCGATCAGTTGCTGGAGG
CGTTGACGGCGCATACCGTGGATATCGGCATCGGCTTCTTTGAACTTTCCACGTTGCAGGAGCTGCATTTCCAGTCGCAG
CCATTGGCGGACGCCGGCGTTGAATTGGTGTTCCATCCTGAGTACTTCCCCGAACTGACAGGGGATACGCCAATGACGTT
GGAGGAGGTGGCGGCACTGCCGCTGTGTCTGGCGGAACCGACGCGTTATTTCCGCCGCTACCTTGATCAAAACTTCCGTG
AAGCCGGTTTGACGCTGCATGTACGTATGGAAACCACCTCGATATTCCAATTGCTGCAGGGCATTTTTGTTGGCCTGGGC
TGCGGATTGTTTCCGCCAGGCAACCTGTTGCCGACCATGATGCCGGAGCTACAACGCAGGCCGGTGACCATCGCAGCCAT
GTCACGTCACGCCGCAGTGGTCACCGCCGAGCCAGGGCGCGCATCGCCATTGGCGCAGCACTTTTTTGATGCCGCGCGCG
GTTGGCTGCTGCGGTAA

Upstream 100 bases:

>100_bases
ATGTGAAGTTGAAAATCTGACTCTCGGGGCGCAGCGCTCCGCGCCCGAAATCCAGCAGCGATGATATACTCAGGTCAGTC
ATGACTTGTTGAGCCGTTTT

Downstream 100 bases:

>100_bases
CTATTCCGCCTGGCTTTCGTTGAAGTACTGTGTGTCACCCAGAGTTTGGCGTAAACGGTTCTCCCAGGCGTAGAGTGCCC
CGGTGAGGATCACGTCCAGC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: Bsd operon regulatory protein [H]

Number of amino acids: Translated: 298; Mature: 298

Protein sequence:

>298_residues
MDIKQLIYLCNLERERHFGRAAQVSFVSQPTLSMRLKNLEKELGVSLINRGNNFEGFTAEGERVLSWAREIVSVYQGLKL
EVESLKHGLSGTLRIGAVPQCSISLAQMLKAVSERFPQLDYRVSVLSADQLLEALTAHTVDIGIGFFELSTLQELHFQSQ
PLADAGVELVFHPEYFPELTGDTPMTLEEVAALPLCLAEPTRYFRRYLDQNFREAGLTLHVRMETTSIFQLLQGIFVGLG
CGLFPPGNLLPTMMPELQRRPVTIAAMSRHAAVVTAEPGRASPLAQHFFDAARGWLLR

Sequences:

>Translated_298_residues
MDIKQLIYLCNLERERHFGRAAQVSFVSQPTLSMRLKNLEKELGVSLINRGNNFEGFTAEGERVLSWAREIVSVYQGLKL
EVESLKHGLSGTLRIGAVPQCSISLAQMLKAVSERFPQLDYRVSVLSADQLLEALTAHTVDIGIGFFELSTLQELHFQSQ
PLADAGVELVFHPEYFPELTGDTPMTLEEVAALPLCLAEPTRYFRRYLDQNFREAGLTLHVRMETTSIFQLLQGIFVGLG
CGLFPPGNLLPTMMPELQRRPVTIAAMSRHAAVVTAEPGRASPLAQHFFDAARGWLLR
>Mature_298_residues
MDIKQLIYLCNLERERHFGRAAQVSFVSQPTLSMRLKNLEKELGVSLINRGNNFEGFTAEGERVLSWAREIVSVYQGLKL
EVESLKHGLSGTLRIGAVPQCSISLAQMLKAVSERFPQLDYRVSVLSADQLLEALTAHTVDIGIGFFELSTLQELHFQSQ
PLADAGVELVFHPEYFPELTGDTPMTLEEVAALPLCLAEPTRYFRRYLDQNFREAGLTLHVRMETTSIFQLLQGIFVGLG
CGLFPPGNLLPTMMPELQRRPVTIAAMSRHAAVVTAEPGRASPLAQHFFDAARGWLLR

Specific function: Could be a positive regulator of bsdBCD expression in response to salicylic acid [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787530, Length=262, Percent_Identity=25.5725190839695, Blast_Score=78, Evalue=6e-16,
Organism=Escherichia coli, GI1790399, Length=247, Percent_Identity=29.5546558704453, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1787879, Length=256, Percent_Identity=26.171875, Blast_Score=71, Evalue=7e-14,
Organism=Escherichia coli, GI48994962, Length=82, Percent_Identity=39.0243902439024, Blast_Score=65, Evalue=6e-12,
Organism=Escherichia coli, GI1788296, Length=251, Percent_Identity=25.8964143426295, Blast_Score=62, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33269; Mature: 33269

Theoretical pI: Translated: 6.31; Mature: 6.31

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDIKQLIYLCNLERERHFGRAAQVSFVSQPTLSMRLKNLEKELGVSLINRGNNFEGFTAE
CCHHHHHHHHCCHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
GERVLSWAREIVSVYQGLKLEVESLKHGLSGTLRIGAVPQCSISLAQMLKAVSERFPQLD
HHHHHHHHHHHHHHHCCCCEEHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHCCCCC
YRVSVLSADQLLEALTAHTVDIGIGFFELSTLQELHFQSQPLADAGVELVFHPEYFPELT
CEEEHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCC
GDTPMTLEEVAALPLCLAEPTRYFRRYLDQNFREAGLTLHVRMETTSIFQLLQGIFVGLG
CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCEEEEEECHHHHHHHHHHHHHHHC
CGLFPPGNLLPTMMPELQRRPVTIAAMSRHAAVVTAEPGRASPLAQHFFDAARGWLLR
CCCCCCCCCCHHHHHHHHCCCEEEEEECCCEEEEEECCCCCCHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MDIKQLIYLCNLERERHFGRAAQVSFVSQPTLSMRLKNLEKELGVSLINRGNNFEGFTAE
CCHHHHHHHHCCHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
GERVLSWAREIVSVYQGLKLEVESLKHGLSGTLRIGAVPQCSISLAQMLKAVSERFPQLD
HHHHHHHHHHHHHHHCCCCEEHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHCCCCC
YRVSVLSADQLLEALTAHTVDIGIGFFELSTLQELHFQSQPLADAGVELVFHPEYFPELT
CEEEHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCC
GDTPMTLEEVAALPLCLAEPTRYFRRYLDQNFREAGLTLHVRMETTSIFQLLQGIFVGLG
CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCEEEEEECHHHHHHHHHHHHHHHC
CGLFPPGNLLPTMMPELQRRPVTIAAMSRHAAVVTAEPGRASPLAQHFFDAARGWLLR
CCCCCCCCCCHHHHHHHHCCCEEEEEECCCEEEEEECCCCCCHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969502; 9384377 [H]