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The map label for this gene is ygbM [C]

Identifier: 157370634

GI number: 157370634

Start: 2616011

End: 2616790

Strand: Direct

Name: ygbM [C]

Synonym: Spro_2394

Alternate gene names: 157370634

Gene position: 2616011-2616790 (Clockwise)

Preceding gene: 157370633

Following gene: 157370635

Centisome position: 48.01

GC content: 59.1

Gene sequence:

>780_bases
ATGGCGAGTTTTCAACTGTCCGTTTGCGCCGAAATGGTGTTTCTCGACCTGCCGTTTGCAGAACGTGTAGCGCGTATTGA
TGCGCTGGGTTTCGGCGTCGAAATCTGGAACTGGGCCAATAAAGACCTTGATGCTTTGGTGGCTACCGGAGCGCGCTTGA
CTTCGATGACCGGCTATCTCAGCGGCAACCTGACCGACGATGTGGAAATCGCTCAACTGTTGCAAAGCGCCGAACAGTCG
CTGGCGGTGGCGCAACGCTTGAATTGCCCGTGCCTGAATCTGCACGGTACCGGCCTGGACTCGCAAGGGCTGCCGGTGAA
ACCGGTGGCGGTGGTGACGGGCGCAATGTGGCTGAAGGCGGCCAATACGCTGACCCGGCTGGCAGAAATGGCAGAGCGCG
TGGGGAAGGTTTTCACGCTGGAAAACCTCAACCTGCCGCTGGATCACCCGGGTACGCCTTTTGCCAAAGCCGACGACACT
TTGGCTTTGGTGGAGGCGGTTAATCGACCGGGGTTGAAGATGAATCTCGATCTTTACCATGCGCAAATTGGCGAGGGCAA
CCTGATTGAGCTGATGCGCCGCTGCGGCCCGGCAATCGGTGAAATTCAGGTGGCGGACGTGCCGGGGCGAAAACAACCCG
GTACCGGCGAAATCAACTACCGCGCCATTGCCCGCGCGTTGGACGAAATGGGCTATCAGGGGGTGGTGGCGATGGAAGGC
TGGGCATCCGGTGACAGCACCGAGGCGCTGCACCAGTTCCGCGACCATTTCACTCTATAA

Upstream 100 bases:

>100_bases
CTCGGGCGACGGGGCAGGATGCGCGCAATGCCCTGGAAATCGCACTGGCCTGTATTTCGTCGGTACAGCAGGGCAAACCG
ATCAGGTTGGGGGAACAATA

Downstream 100 bases:

>100_bases
ACCACAACAAACCGGGTATTGGCCTGTTGCCCGGAATAATTAGTGATGCGTTGATTTTAATAATAAATAAACCTCAACCT
ACGGGATGTCATCATGAAAA

Product: xylose isomerase domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 259; Mature: 258

Protein sequence:

>259_residues
MASFQLSVCAEMVFLDLPFAERVARIDALGFGVEIWNWANKDLDALVATGARLTSMTGYLSGNLTDDVEIAQLLQSAEQS
LAVAQRLNCPCLNLHGTGLDSQGLPVKPVAVVTGAMWLKAANTLTRLAEMAERVGKVFTLENLNLPLDHPGTPFAKADDT
LALVEAVNRPGLKMNLDLYHAQIGEGNLIELMRRCGPAIGEIQVADVPGRKQPGTGEINYRAIARALDEMGYQGVVAMEG
WASGDSTEALHQFRDHFTL

Sequences:

>Translated_259_residues
MASFQLSVCAEMVFLDLPFAERVARIDALGFGVEIWNWANKDLDALVATGARLTSMTGYLSGNLTDDVEIAQLLQSAEQS
LAVAQRLNCPCLNLHGTGLDSQGLPVKPVAVVTGAMWLKAANTLTRLAEMAERVGKVFTLENLNLPLDHPGTPFAKADDT
LALVEAVNRPGLKMNLDLYHAQIGEGNLIELMRRCGPAIGEIQVADVPGRKQPGTGEINYRAIARALDEMGYQGVVAMEG
WASGDSTEALHQFRDHFTL
>Mature_258_residues
ASFQLSVCAEMVFLDLPFAERVARIDALGFGVEIWNWANKDLDALVATGARLTSMTGYLSGNLTDDVEIAQLLQSAEQSL
AVAQRLNCPCLNLHGTGLDSQGLPVKPVAVVTGAMWLKAANTLTRLAEMAERVGKVFTLENLNLPLDHPGTPFAKADDTL
ALVEAVNRPGLKMNLDLYHAQIGEGNLIELMRRCGPAIGEIQVADVPGRKQPGTGEINYRAIARALDEMGYQGVVAMEGW
ASGDSTEALHQFRDHFTL

Specific function: Unknown

COG id: COG3622

COG function: function code G; Hydroxypyruvate isomerase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the hyi family [H]

Homologues:

Organism=Homo sapiens, GI300068962, Length=188, Percent_Identity=30.8510638297872, Blast_Score=85, Evalue=6e-17,
Organism=Homo sapiens, GI300068964, Length=167, Percent_Identity=31.1377245508982, Blast_Score=75, Evalue=7e-14,
Organism=Escherichia coli, GI1789095, Length=119, Percent_Identity=37.8151260504202, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1786718, Length=107, Percent_Identity=36.4485981308411, Blast_Score=70, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013022
- InterPro:   IPR012307 [H]

Pfam domain/function: PF01261 AP_endonuc_2 [H]

EC number: NA

Molecular weight: Translated: 27974; Mature: 27843

Theoretical pI: Translated: 4.63; Mature: 4.63

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MASFQLSVCAEMVFLDLPFAERVARIDALGFGVEIWNWANKDLDALVATGARLTSMTGYL
CCCCHHHHHHHHHHHCCCHHHHHHHHHHHHCCEEEECCCCCCHHHHHHCCHHHHHHHHHH
SGNLTDDVEIAQLLQSAEQSLAVAQRLNCPCLNLHGTGLDSQGLPVKPVAVVTGAMWLKA
CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHH
ANTLTRLAEMAERVGKVFTLENLNLPLDHPGTPFAKADDTLALVEAVNRPGLKMNLDLYH
HHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCEEEEEEEE
AQIGEGNLIELMRRCGPAIGEIQVADVPGRKQPGTGEINYRAIARALDEMGYQGVVAMEG
EECCCCHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEECC
WASGDSTEALHQFRDHFTL
CCCCCHHHHHHHHHHHCCC
>Mature Secondary Structure 
ASFQLSVCAEMVFLDLPFAERVARIDALGFGVEIWNWANKDLDALVATGARLTSMTGYL
CCCHHHHHHHHHHHCCCHHHHHHHHHHHHCCEEEECCCCCCHHHHHHCCHHHHHHHHHH
SGNLTDDVEIAQLLQSAEQSLAVAQRLNCPCLNLHGTGLDSQGLPVKPVAVVTGAMWLKA
CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHH
ANTLTRLAEMAERVGKVFTLENLNLPLDHPGTPFAKADDTLALVEAVNRPGLKMNLDLYH
HHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCEEEEEEEE
AQIGEGNLIELMRRCGPAIGEIQVADVPGRKQPGTGEINYRAIARALDEMGYQGVVAMEG
EECCCCHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEECC
WASGDSTEALHQFRDHFTL
CCCCCHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]