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The map label for this gene is ddpC [H]

Identifier: 157370589

GI number: 157370589

Start: 2561419

End: 2562306

Strand: Direct

Name: ddpC [H]

Synonym: Spro_2349

Alternate gene names: 157370589

Gene position: 2561419-2562306 (Clockwise)

Preceding gene: 157370588

Following gene: 157370590

Centisome position: 47.01

GC content: 63.06

Gene sequence:

>888_bases
ATGACTCAAATCGAACAACCGCCGGCGGCGCAACCGGCCTTGCGTTTTGTCAGCCTGCGCCGTGCCTGGTATCGCGTGCG
GCGTAGCCCGCTGACGTTACTGGGTGCCGCTATCATGATTGCCGTACTGTTCCTGATGCTGTTCTCGCCGTGGCTGGTAC
CGCACAACCCGGATGCGATTGATCTTACCGCACGCCTGCTGCCGCCTTCGGCAGAACACTGGTTCGGTACTGATGAAGTA
GGCCGCGATCTATTCAGCCGGGTACTGGTCGGCAGCCGTCAGTCGGTGGCCGCCGGGCTGGCGGTGGTGGTGCTGGCGGG
GGGCATTGGCTCGCTGCTTGGCTGCTTCTCCGGCGTGATGGGCGGCACGGTGGATGCGCTGATTATGCGCTGCATGGATA
TTATGCTGTCGGTGCCTTCGCTGGTGCTGACCATGGCGCTGGCGGCGGCGCTCGGCCCCAGCCTGTTCAATGCCATGTTG
GCTATCGCGGTGGTACGCATTCCGTTTTATGTGCGGCTGGCGCGTGGCCAAACCTTAACGCTACGCCATCAGGCTTATAT
GCAGGCAGCACGCACCTTTGGTGCCTCGCGTTGGCACCTGATCGGTTGGCATGTACTGCGTAACGTAATGCCGCCGTTGG
TGGTGCAGGCGTCGCTGGATATTGGCACGGCGATCCTGATGGCGGCCACGCTGGGCTTTATCGGCCTGGGCGCTCAGCAG
CCGACCGCCGAGTGGGGCGCGATGGTGGCCAACGGGCGCAACTATGTGCTCGACCAGTGGTGGTATTCGGCCTTTCCCGG
TACGGCGATCCTGATCACCGCCACCGGCTTTAACCTGTTCGGCGATGGTCTGCGCGACCTGCTGGATCCTAAAACCCGGG
GGCGCTGA

Upstream 100 bases:

>100_bases
TTGCCGTGGTGGTGTCCTTCGCCTACGTGATGGTGAATTTGATCGTCGATCTGCTTTATCTGTGGATCGACCCGCGAATG
GGGCGCGAGGGATAATGACA

Downstream 100 bases:

>100_bases
TGAGTGAAGTTACCGTTTTATCTATCGAAGAGCTGCAACTGGAATTCCCGGTCTACGGCGGCAGCGTCAAGGCACTTAAC
CGCGTTTCGCTGCAGGTTAA

Product: ATP-dependent peptide transporter membrane subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 295; Mature: 294

Protein sequence:

>295_residues
MTQIEQPPAAQPALRFVSLRRAWYRVRRSPLTLLGAAIMIAVLFLMLFSPWLVPHNPDAIDLTARLLPPSAEHWFGTDEV
GRDLFSRVLVGSRQSVAAGLAVVVLAGGIGSLLGCFSGVMGGTVDALIMRCMDIMLSVPSLVLTMALAAALGPSLFNAML
AIAVVRIPFYVRLARGQTLTLRHQAYMQAARTFGASRWHLIGWHVLRNVMPPLVVQASLDIGTAILMAATLGFIGLGAQQ
PTAEWGAMVANGRNYVLDQWWYSAFPGTAILITATGFNLFGDGLRDLLDPKTRGR

Sequences:

>Translated_295_residues
MTQIEQPPAAQPALRFVSLRRAWYRVRRSPLTLLGAAIMIAVLFLMLFSPWLVPHNPDAIDLTARLLPPSAEHWFGTDEV
GRDLFSRVLVGSRQSVAAGLAVVVLAGGIGSLLGCFSGVMGGTVDALIMRCMDIMLSVPSLVLTMALAAALGPSLFNAML
AIAVVRIPFYVRLARGQTLTLRHQAYMQAARTFGASRWHLIGWHVLRNVMPPLVVQASLDIGTAILMAATLGFIGLGAQQ
PTAEWGAMVANGRNYVLDQWWYSAFPGTAILITATGFNLFGDGLRDLLDPKTRGR
>Mature_294_residues
TQIEQPPAAQPALRFVSLRRAWYRVRRSPLTLLGAAIMIAVLFLMLFSPWLVPHNPDAIDLTARLLPPSAEHWFGTDEVG
RDLFSRVLVGSRQSVAAGLAVVVLAGGIGSLLGCFSGVMGGTVDALIMRCMDIMLSVPSLVLTMALAAALGPSLFNAMLA
IAVVRIPFYVRLARGQTLTLRHQAYMQAARTFGASRWHLIGWHVLRNVMPPLVVQASLDIGTAILMAATLGFIGLGAQQP
TAEWGAMVANGRNYVLDQWWYSAFPGTAILITATGFNLFGDGLRDLLDPKTRGR

Specific function: Part of the ABC transporter complex ddpABCDF, which is probably involved in D,D-dipeptide transport. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1173

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787760, Length=293, Percent_Identity=74.7440273037543, Blast_Score=447, Evalue=1e-127,
Organism=Escherichia coli, GI1787054, Length=273, Percent_Identity=41.3919413919414, Blast_Score=218, Evalue=3e-58,
Organism=Escherichia coli, GI1789964, Length=299, Percent_Identity=41.8060200668896, Blast_Score=197, Evalue=5e-52,
Organism=Escherichia coli, GI1789889, Length=243, Percent_Identity=39.917695473251, Blast_Score=185, Evalue=3e-48,
Organism=Escherichia coli, GI1787498, Length=280, Percent_Identity=35.7142857142857, Blast_Score=147, Evalue=7e-37,
Organism=Escherichia coli, GI1787549, Length=274, Percent_Identity=33.9416058394161, Blast_Score=145, Evalue=2e-36,
Organism=Escherichia coli, GI1788505, Length=227, Percent_Identity=30.8370044052863, Blast_Score=95, Evalue=5e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 31921; Mature: 31790

Theoretical pI: Translated: 10.77; Mature: 10.77

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
4.4 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTQIEQPPAAQPALRFVSLRRAWYRVRRSPLTLLGAAIMIAVLFLMLFSPWLVPHNPDAI
CCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHH
DLTARLLPPSAEHWFGTDEVGRDLFSRVLVGSRQSVAAGLAVVVLAGGIGSLLGCFSGVM
HHHHHHCCCCCHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHHHHHHHH
GGTVDALIMRCMDIMLSVPSLVLTMALAAALGPSLFNAMLAIAVVRIPFYVRLARGQTLT
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHEEECCCCEEE
LRHQAYMQAARTFGASRWHLIGWHVLRNVMPPLVVQASLDIGTAILMAATLGFIGLGAQQ
HHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHEEEHHHHHHHHHHHHHHHHHHHCCCCC
PTAEWGAMVANGRNYVLDQWWYSAFPGTAILITATGFNLFGDGLRDLLDPKTRGR
CCHHHHHHHCCCCCHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure 
TQIEQPPAAQPALRFVSLRRAWYRVRRSPLTLLGAAIMIAVLFLMLFSPWLVPHNPDAI
CCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHH
DLTARLLPPSAEHWFGTDEVGRDLFSRVLVGSRQSVAAGLAVVVLAGGIGSLLGCFSGVM
HHHHHHCCCCCHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHHHHHHHH
GGTVDALIMRCMDIMLSVPSLVLTMALAAALGPSLFNAMLAIAVVRIPFYVRLARGQTLT
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHEEECCCCEEE
LRHQAYMQAARTFGASRWHLIGWHVLRNVMPPLVVQASLDIGTAILMAATLGFIGLGAQQ
HHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHEEEHHHHHHHHHHHHHHHHHHHCCCCC
PTAEWGAMVANGRNYVLDQWWYSAFPGTAILITATGFNLFGDGLRDLLDPKTRGR
CCHHHHHHHCCCCCHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503; 9751644 [H]