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The map label for this gene is ddpB [H]

Identifier: 157370588

GI number: 157370588

Start: 2560397

End: 2561413

Strand: Direct

Name: ddpB [H]

Synonym: Spro_2348

Alternate gene names: 157370588

Gene position: 2560397-2561413 (Clockwise)

Preceding gene: 157370587

Following gene: 157370589

Centisome position: 46.99

GC content: 59.59

Gene sequence:

>1017_bases
ATGAACGTTTGGAGCCTTATCCGTCAGCGTTGCTGGGGGTTGGTGCTGGTGATGTTCGGGGTGTGCGTTATCACCTTTAC
CATTTCTCACCTGATCCCCGGCGATCCGGCGCGGCTGCTGGCCGGTGACCGCGCCAGCGAAGAAATTGTCCAGCATATTC
GCCAGCAGCTAGGGTTGGATCAGCCGTTATATGTGCAATTTGGCCGCTACGTGCTGGATCTGTTGCATGGCGATCTGGGA
ACTTCCATTCGCACCGGGCGACCGGTACTGGAAGATCTGCGAGCCTTCTTTCCCGCCACGCTGGAGCTGGCTTTTTGCGC
CTTGTTGCTGGCAATCGCGCTGGGAGTGCCGCTCGGCGTGGTATCGGCGGTTTATCGCAATAAATGGCCCGATCATCTGG
TGCGGTTACTGTCGGTGACCGGTATCTCGACCCCGGCATTCTGGCTGGGGCTGGGCGTCATTATCCTTTTTTACGGCCAA
CTCAATCTGTTACCCGGCGGCGGCAGGCTGGACGACTGGCTGGATCCACCGACCCATATCACCGGCTTCTACCTGCTCGA
TTCCCTGTTGACCGGCAATGGCGAAGCCTTCTGGAACAGCCTGCAGCACCTGATTTTGCCGGCGCTGACCCTGGCCTTTG
TTCACCTCGGGGTGGTGGCGCGGCAAATTCGATCGGCGATGCTGGAACAGTTGGGAGAAGACTATATCCGCACTGCGCGC
GCCAACGGCCTTTCGCATTGGCGAGTGGTGCTCGGGCATGCGCTGCCCAACGCCCTGATCCCGTCGGTGACGGTGTTGGG
GCTGGCGCTGGGGGATTTACTGTATGGCGCGGTACTGACCGAAACGGTATTCGCCTGGCCGGGTATGGGGGCCTATGTGG
TGGACTCCATTCAGGCGCTGGATTTCCCGGCGGTAATGGGGTTTGCCGTGGTGGTGTCCTTCGCCTACGTGATGGTGAAT
TTGATCGTCGATCTGCTTTATCTGTGGATCGACCCGCGAATGGGGCGCGAGGGATAA

Upstream 100 bases:

>100_bases
GCCCCACGGTGCGCTAGGCCCGAGTATCTCAGGTTTGAATACAACATAGCTGTCTAACTCGGGCAGCCGTTTGGCTGCCC
CTGCACCATGGGAAATCGCT

Downstream 100 bases:

>100_bases
TGACAATGACTCAAATCGAACAACCGCCGGCGGCGCAACCGGCCTTGCGTTTTGTCAGCCTGCGCCGTGCCTGGTATCGC
GTGCGGCGTAGCCCGCTGAC

Product: binding-protein-dependent transport systems inner membrane component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 338; Mature: 338

Protein sequence:

>338_residues
MNVWSLIRQRCWGLVLVMFGVCVITFTISHLIPGDPARLLAGDRASEEIVQHIRQQLGLDQPLYVQFGRYVLDLLHGDLG
TSIRTGRPVLEDLRAFFPATLELAFCALLLAIALGVPLGVVSAVYRNKWPDHLVRLLSVTGISTPAFWLGLGVIILFYGQ
LNLLPGGGRLDDWLDPPTHITGFYLLDSLLTGNGEAFWNSLQHLILPALTLAFVHLGVVARQIRSAMLEQLGEDYIRTAR
ANGLSHWRVVLGHALPNALIPSVTVLGLALGDLLYGAVLTETVFAWPGMGAYVVDSIQALDFPAVMGFAVVVSFAYVMVN
LIVDLLYLWIDPRMGREG

Sequences:

>Translated_338_residues
MNVWSLIRQRCWGLVLVMFGVCVITFTISHLIPGDPARLLAGDRASEEIVQHIRQQLGLDQPLYVQFGRYVLDLLHGDLG
TSIRTGRPVLEDLRAFFPATLELAFCALLLAIALGVPLGVVSAVYRNKWPDHLVRLLSVTGISTPAFWLGLGVIILFYGQ
LNLLPGGGRLDDWLDPPTHITGFYLLDSLLTGNGEAFWNSLQHLILPALTLAFVHLGVVARQIRSAMLEQLGEDYIRTAR
ANGLSHWRVVLGHALPNALIPSVTVLGLALGDLLYGAVLTETVFAWPGMGAYVVDSIQALDFPAVMGFAVVVSFAYVMVN
LIVDLLYLWIDPRMGREG
>Mature_338_residues
MNVWSLIRQRCWGLVLVMFGVCVITFTISHLIPGDPARLLAGDRASEEIVQHIRQQLGLDQPLYVQFGRYVLDLLHGDLG
TSIRTGRPVLEDLRAFFPATLELAFCALLLAIALGVPLGVVSAVYRNKWPDHLVRLLSVTGISTPAFWLGLGVIILFYGQ
LNLLPGGGRLDDWLDPPTHITGFYLLDSLLTGNGEAFWNSLQHLILPALTLAFVHLGVVARQIRSAMLEQLGEDYIRTAR
ANGLSHWRVVLGHALPNALIPSVTVLGLALGDLLYGAVLTETVFAWPGMGAYVVDSIQALDFPAVMGFAVVVSFAYVMVN
LIVDLLYLWIDPRMGREG

Specific function: Part of the ABC transporter complex ddpABCDF, which is probably involved in D,D-dipeptide transport. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0601

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787761, Length=338, Percent_Identity=83.4319526627219, Blast_Score=525, Evalue=1e-150,
Organism=Escherichia coli, GI1789965, Length=332, Percent_Identity=45.1807228915663, Blast_Score=284, Evalue=7e-78,
Organism=Escherichia coli, GI1787053, Length=324, Percent_Identity=40.7407407407407, Blast_Score=246, Evalue=1e-66,
Organism=Escherichia coli, GI1789888, Length=332, Percent_Identity=36.144578313253, Blast_Score=204, Evalue=9e-54,
Organism=Escherichia coli, GI1787550, Length=267, Percent_Identity=34.4569288389513, Blast_Score=166, Evalue=2e-42,
Organism=Escherichia coli, GI1787497, Length=335, Percent_Identity=31.6417910447761, Blast_Score=163, Evalue=1e-41,
Organism=Escherichia coli, GI1788504, Length=298, Percent_Identity=22.4832214765101, Blast_Score=98, Evalue=8e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 37102; Mature: 37102

Theoretical pI: Translated: 6.23; Mature: 6.23

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNVWSLIRQRCWGLVLVMFGVCVITFTISHLIPGDPARLLAGDRASEEIVQHIRQQLGLD
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCHHHHHHHHHHHHHCCC
QPLYVQFGRYVLDLLHGDLGTSIRTGRPVLEDLRAFFPATLELAFCALLLAIALGVPLGV
CCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
VSAVYRNKWPDHLVRLLSVTGISTPAFWLGLGVIILFYGQLNLLPGGGRLDDWLDPPTHI
HHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHH
TGFYLLDSLLTGNGEAFWNSLQHLILPALTLAFVHLGVVARQIRSAMLEQLGEDYIRTAR
HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ANGLSHWRVVLGHALPNALIPSVTVLGLALGDLLYGAVLTETVFAWPGMGAYVVDSIQAL
HCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
DFPAVMGFAVVVSFAYVMVNLIVDLLYLWIDPRMGREG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MNVWSLIRQRCWGLVLVMFGVCVITFTISHLIPGDPARLLAGDRASEEIVQHIRQQLGLD
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCHHHHHHHHHHHHHCCC
QPLYVQFGRYVLDLLHGDLGTSIRTGRPVLEDLRAFFPATLELAFCALLLAIALGVPLGV
CCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
VSAVYRNKWPDHLVRLLSVTGISTPAFWLGLGVIILFYGQLNLLPGGGRLDDWLDPPTHI
HHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHH
TGFYLLDSLLTGNGEAFWNSLQHLILPALTLAFVHLGVVARQIRSAMLEQLGEDYIRTAR
HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ANGLSHWRVVLGHALPNALIPSVTVLGLALGDLLYGAVLTETVFAWPGMGAYVVDSIQAL
HCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
DFPAVMGFAVVVSFAYVMVNLIVDLLYLWIDPRMGREG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503; 9751644 [H]