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The map label for this gene is ycaN [H]

Identifier: 157370514

GI number: 157370514

Start: 2475334

End: 2476263

Strand: Reverse

Name: ycaN [H]

Synonym: Spro_2274

Alternate gene names: 157370514

Gene position: 2476263-2475334 (Counterclockwise)

Preceding gene: 157370516

Following gene: 157370512

Centisome position: 45.45

GC content: 57.42

Gene sequence:

>930_bases
ATGAGTTCACTGTTGCAGTTACTGCCGTTTTTCGAAGCCGTTGCCCGGCTGGGCAGCTTTACTCAGGCGGCCAGTCAGTT
GGGCGTCACCCCACCCGCGGTGTCGCAAAACATTCAGGCGTTGGAAACCCGGCTTGGCGTACGGCTGTTCAACCGCACCA
GTCGGTCGGTGCGGCTAAGCGATGAGGGCCACCTTTTTTACCAACGGGTGGCGCCGGCGATGGGCCAAATAGAGGGGGCC
GCAGACGACGTTCGCGCCCTGCACGGTCACCCTTCCGGCCTGCTGCGCATTACCCTGCCGCAGTTGGCCGCCTCGCTGTT
GGTGATGCCTCATCTGGCGGAGTTTCAGGCGCTTTACCCCGAGGTGCAGCTTGAACTGTTTACCGACGACCACTTTTCCG
ATTTGGTGTTGGACAGTTTCGATGCCGGTATCCGTATGCACGCCATGTTGCCAAAAGACATGATTGCAGTGCCGATCGAC
AACGGCCAACGGCGGATGATTATCGCCACGCCCGGCTATCTGGCGCAGTACGGTACACCACTGACGCCGCAGGCACTGTA
CGAGCACAACTGCCTGCGCTACCGTTTCCCCGTCAGCGGTAAGTTTGAGCCATGGTATTTCAGGCAGGATGAAGAGCTAT
TAATGCTGGAGTTCAGCGGCAGCCAGATATTTAATGAAGATCGCCTGATTAAAGACGCCGCGTTGGCGGGATTAGGCATT
ACCCAGCGCTTTAGCGGCACGGTGCAACGCGAACTAAACAGTGGACAACTGGTGGAAATACTGGCCGATTATGGCAGCGA
CTTCCCCGGGTTTTTCATCTACTTTCCGGCCAGTCGGCATATGCCGCTCAAGCTGCGGGTATTTGTTGATTTTATGCGGG
AAAAGCGGGCGCACCAGTCATCGTCTCAGGACGCCATTACAGCGTCCTGA

Upstream 100 bases:

>100_bases
TTTGTTGCTCTCTAAGGGATAATAAAACCAGTCTAAAACGATTATTATAAATTTAAACACCCAATTACTTAACGAATCAT
TAAGCAGGAATTACTGATAG

Downstream 100 bases:

>100_bases
GAGGCCATTAATTAACGTTTATCCAGCGCCTGTATCAACTGGTAGGTGGCCGCAACCCGATCGTCGTTCGGGAACCATTT
GTTGGCCAGCATCACCACGG

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 309; Mature: 308

Protein sequence:

>309_residues
MSSLLQLLPFFEAVARLGSFTQAASQLGVTPPAVSQNIQALETRLGVRLFNRTSRSVRLSDEGHLFYQRVAPAMGQIEGA
ADDVRALHGHPSGLLRITLPQLAASLLVMPHLAEFQALYPEVQLELFTDDHFSDLVLDSFDAGIRMHAMLPKDMIAVPID
NGQRRMIIATPGYLAQYGTPLTPQALYEHNCLRYRFPVSGKFEPWYFRQDEELLMLEFSGSQIFNEDRLIKDAALAGLGI
TQRFSGTVQRELNSGQLVEILADYGSDFPGFFIYFPASRHMPLKLRVFVDFMREKRAHQSSSQDAITAS

Sequences:

>Translated_309_residues
MSSLLQLLPFFEAVARLGSFTQAASQLGVTPPAVSQNIQALETRLGVRLFNRTSRSVRLSDEGHLFYQRVAPAMGQIEGA
ADDVRALHGHPSGLLRITLPQLAASLLVMPHLAEFQALYPEVQLELFTDDHFSDLVLDSFDAGIRMHAMLPKDMIAVPID
NGQRRMIIATPGYLAQYGTPLTPQALYEHNCLRYRFPVSGKFEPWYFRQDEELLMLEFSGSQIFNEDRLIKDAALAGLGI
TQRFSGTVQRELNSGQLVEILADYGSDFPGFFIYFPASRHMPLKLRVFVDFMREKRAHQSSSQDAITAS
>Mature_308_residues
SSLLQLLPFFEAVARLGSFTQAASQLGVTPPAVSQNIQALETRLGVRLFNRTSRSVRLSDEGHLFYQRVAPAMGQIEGAA
DDVRALHGHPSGLLRITLPQLAASLLVMPHLAEFQALYPEVQLELFTDDHFSDLVLDSFDAGIRMHAMLPKDMIAVPIDN
GQRRMIIATPGYLAQYGTPLTPQALYEHNCLRYRFPVSGKFEPWYFRQDEELLMLEFSGSQIFNEDRLIKDAALAGLGIT
QRFSGTVQRELNSGQLVEILADYGSDFPGFFIYFPASRHMPLKLRVFVDFMREKRAHQSSSQDAITAS

Specific function: Unknown

COG id: COG0583

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787128, Length=290, Percent_Identity=37.2413793103448, Blast_Score=202, Evalue=2e-53,
Organism=Escherichia coli, GI1787589, Length=287, Percent_Identity=31.0104529616725, Blast_Score=162, Evalue=3e-41,
Organism=Escherichia coli, GI1786401, Length=297, Percent_Identity=31.986531986532, Blast_Score=152, Evalue=4e-38,
Organism=Escherichia coli, GI145693193, Length=293, Percent_Identity=31.3993174061433, Blast_Score=129, Evalue=3e-31,
Organism=Escherichia coli, GI1789440, Length=278, Percent_Identity=32.7338129496403, Blast_Score=127, Evalue=8e-31,
Organism=Escherichia coli, GI87081978, Length=294, Percent_Identity=30.2721088435374, Blast_Score=112, Evalue=4e-26,
Organism=Escherichia coli, GI1789639, Length=298, Percent_Identity=27.1812080536913, Blast_Score=110, Evalue=1e-25,
Organism=Escherichia coli, GI157672245, Length=163, Percent_Identity=33.1288343558282, Blast_Score=88, Evalue=7e-19,
Organism=Escherichia coli, GI1786448, Length=295, Percent_Identity=27.4576271186441, Blast_Score=88, Evalue=8e-19,
Organism=Escherichia coli, GI1789173, Length=304, Percent_Identity=26.9736842105263, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1788706, Length=301, Percent_Identity=25.9136212624585, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1787879, Length=158, Percent_Identity=33.5443037974684, Blast_Score=71, Evalue=9e-14,
Organism=Escherichia coli, GI1787806, Length=211, Percent_Identity=30.3317535545024, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1787601, Length=117, Percent_Identity=31.6239316239316, Blast_Score=66, Evalue=4e-12,
Organism=Escherichia coli, GI1788748, Length=241, Percent_Identity=26.9709543568465, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1788297, Length=164, Percent_Identity=31.0975609756098, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 34623; Mature: 34492

Theoretical pI: Translated: 6.24; Mature: 6.24

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSLLQLLPFFEAVARLGSFTQAASQLGVTPPAVSQNIQALETRLGVRLFNRTSRSVRLS
CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEC
DEGHLFYQRVAPAMGQIEGAADDVRALHGHPSGLLRITLPQLAASLLVMPHLAEFQALYP
CCCCCHHHHHHHHHHHCCCCHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHCC
EVQLELFTDDHFSDLVLDSFDAGIRMHAMLPKDMIAVPIDNGQRRMIIATPGYLAQYGTP
CEEEEEECCCCHHHHHHHHHCCCEEEEEECCCCEEEEECCCCCEEEEEECCCHHHHCCCC
LTPQALYEHNCLRYRFPVSGKFEPWYFRQDEELLMLEFSGSQIFNEDRLIKDAALAGLGI
CCHHHHHHCCCEEEECCCCCCCCCCEECCCCCEEEEEECCCCCCCCCHHHHHHHHHCCCC
TQRFSGTVQRELNSGQLVEILADYGSDFPGFFIYFPASRHMPLKLRVFVDFMREKRAHQS
HHHHCCHHHHHCCCCHHHHHHHHHCCCCCCEEEEECCCCCCCEEHHHHHHHHHHHHHHCC
SSQDAITAS
CCCCCCCCC
>Mature Secondary Structure 
SSLLQLLPFFEAVARLGSFTQAASQLGVTPPAVSQNIQALETRLGVRLFNRTSRSVRLS
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEC
DEGHLFYQRVAPAMGQIEGAADDVRALHGHPSGLLRITLPQLAASLLVMPHLAEFQALYP
CCCCCHHHHHHHHHHHCCCCHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHCC
EVQLELFTDDHFSDLVLDSFDAGIRMHAMLPKDMIAVPIDNGQRRMIIATPGYLAQYGTP
CEEEEEECCCCHHHHHHHHHCCCEEEEEECCCCEEEEECCCCCEEEEEECCCHHHHCCCC
LTPQALYEHNCLRYRFPVSGKFEPWYFRQDEELLMLEFSGSQIFNEDRLIKDAALAGLGI
CCHHHHHHCCCEEEECCCCCCCCCCEECCCCCEEEEEECCCCCCCCCHHHHHHHHHCCCC
TQRFSGTVQRELNSGQLVEILADYGSDFPGFFIYFPASRHMPLKLRVFVDFMREKRAHQS
HHHHCCHHHHHCCCCHHHHHHHHHCCCCCCEEEEECCCCCCCEEHHHHHHHHHHHHHHCC
SSQDAITAS
CCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]