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The map label for this gene is sodB [H]

Identifier: 157370436

GI number: 157370436

Start: 2398731

End: 2399309

Strand: Reverse

Name: sodB [H]

Synonym: Spro_2196

Alternate gene names: 157370436

Gene position: 2399309-2398731 (Counterclockwise)

Preceding gene: 157370437

Following gene: 157370435

Centisome position: 44.03

GC content: 51.64

Gene sequence:

>579_bases
ATGTCGTTCGAACTTCCTGCATTACCTTATGAAAAAAACGCCCTCGAACCGCACATTTCCGCAGAAACTCTGGAATACCA
TTATGGCAAGCATCACAACGCCTACGTGGTGAACCTGAACAATCTGCTGAAAGGCAGCAAGTTTGAAGGGTTGTCCCTCG
AAGAGATCGTTAAGGCCTCTGATGGCGGCATCTTCAACAATGCGGCCCAGGTATGGAACCACACTTTCTATTGGCACTGT
CTGTCGCCACAGGGCGGCGGTGAGCCTGAAGGTAAACTGGCCGTGGCGATTAATCAGGCATTTGGTTCTTTCGCCGAATT
TAAACAGCAATTCAGCGACGCCGCAGTGAAAAACTTTGGCGCAGGCTGGACCTGGCTGGTGAAAAAACCGGAGGGTTCGC
TGGCGATTGTTAACACCTCGAACGCAGCGACACCGCTAACCGGTGATGATAAACCGCTACTGACCGTCGACGTTTGGGAA
CACGCCTATTACATCGATTACCGCAACGCGCGACCTGCCTACCTGGAAAACTTCTGGGCACTGGTTAACTGGGCATTTGT
GGAAAAGAACCTGGCGTAA

Upstream 100 bases:

>100_bases
TTCATCGCGAAAATTGCTAAGCTAAATACCCACAATAAAAACAGGCCAACCTAATACCCGTTGTTCCGACGGTAGACTGG
CACTGTACAAGGAGAAAGCA

Downstream 100 bases:

>100_bases
CGCGGGGAAAAACAATCAGGCGCAGCGGGCTGCGCCTGTTTTACTTGAGGGGATCAGTTCAAAGCAGCGGTGAAGCTGAA
AGCAATAATCACGGCCAGCG

Product: superoxide dismutase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 192; Mature: 191

Protein sequence:

>192_residues
MSFELPALPYEKNALEPHISAETLEYHYGKHHNAYVVNLNNLLKGSKFEGLSLEEIVKASDGGIFNNAAQVWNHTFYWHC
LSPQGGGEPEGKLAVAINQAFGSFAEFKQQFSDAAVKNFGAGWTWLVKKPEGSLAIVNTSNAATPLTGDDKPLLTVDVWE
HAYYIDYRNARPAYLENFWALVNWAFVEKNLA

Sequences:

>Translated_192_residues
MSFELPALPYEKNALEPHISAETLEYHYGKHHNAYVVNLNNLLKGSKFEGLSLEEIVKASDGGIFNNAAQVWNHTFYWHC
LSPQGGGEPEGKLAVAINQAFGSFAEFKQQFSDAAVKNFGAGWTWLVKKPEGSLAIVNTSNAATPLTGDDKPLLTVDVWE
HAYYIDYRNARPAYLENFWALVNWAFVEKNLA
>Mature_191_residues
SFELPALPYEKNALEPHISAETLEYHYGKHHNAYVVNLNNLLKGSKFEGLSLEEIVKASDGGIFNNAAQVWNHTFYWHCL
SPQGGGEPEGKLAVAINQAFGSFAEFKQQFSDAAVKNFGAGWTWLVKKPEGSLAIVNTSNAATPLTGDDKPLLTVDVWEH
AYYIDYRNARPAYLENFWALVNWAFVEKNLA

Specific function: Destroys radicals which are normally produced within the cells and which are toxic to biological systems [H]

COG id: COG0605

COG function: function code P; Superoxide dismutase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the iron/manganese superoxide dismutase family [H]

Homologues:

Organism=Homo sapiens, GI67782307, Length=194, Percent_Identity=44.3298969072165, Blast_Score=153, Evalue=1e-37,
Organism=Homo sapiens, GI67782305, Length=194, Percent_Identity=44.3298969072165, Blast_Score=153, Evalue=1e-37,
Organism=Homo sapiens, GI67782309, Length=186, Percent_Identity=38.1720430107527, Blast_Score=112, Evalue=2e-25,
Organism=Escherichia coli, GI1787946, Length=192, Percent_Identity=77.0833333333333, Blast_Score=320, Evalue=3e-89,
Organism=Escherichia coli, GI1790342, Length=198, Percent_Identity=41.4141414141414, Blast_Score=151, Evalue=3e-38,
Organism=Caenorhabditis elegans, GI17506561, Length=198, Percent_Identity=38.3838383838384, Blast_Score=131, Evalue=2e-31,
Organism=Caenorhabditis elegans, GI17569479, Length=196, Percent_Identity=35.2040816326531, Blast_Score=124, Evalue=4e-29,
Organism=Saccharomyces cerevisiae, GI6321796, Length=202, Percent_Identity=36.1386138613861, Blast_Score=111, Evalue=7e-26,
Organism=Drosophila melanogaster, GI17136812, Length=186, Percent_Identity=38.1720430107527, Blast_Score=120, Evalue=6e-28,

Paralogues:

None

Copy number: 2020 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 20 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). 900 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001189
- InterPro:   IPR019833
- InterPro:   IPR019832
- InterPro:   IPR019831 [H]

Pfam domain/function: PF02777 Sod_Fe_C; PF00081 Sod_Fe_N [H]

EC number: =1.15.1.1 [H]

Molecular weight: Translated: 21452; Mature: 21321

Theoretical pI: Translated: 5.53; Mature: 5.53

Prosite motif: PS00088 SOD_MN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
0.5 %Met     (Translated Protein)
1.0 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSFELPALPYEKNALEPHISAETLEYHYGKHHNAYVVNLNNLLKGSKFEGLSLEEIVKAS
CCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEEHHHHCCCCCCCCCCHHHHHHCC
DGGIFNNAAQVWNHTFYWHCLSPQGGGEPEGKLAVAINQAFGSFAEFKQQFSDAAVKNFG
CCCCCCCHHHHHCCEEEEEEECCCCCCCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHCC
AGWTWLVKKPEGSLAIVNTSNAATPLTGDDKPLLTVDVWEHAYYIDYRNARPAYLENFWA
CCEEEEEECCCCCEEEEECCCCCCCCCCCCCCEEEEEECCEEEEEEECCCCCHHHHHHHH
LVNWAFVEKNLA
HHHHHHHHCCCC
>Mature Secondary Structure 
SFELPALPYEKNALEPHISAETLEYHYGKHHNAYVVNLNNLLKGSKFEGLSLEEIVKAS
CCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEEHHHHCCCCCCCCCCHHHHHHCC
DGGIFNNAAQVWNHTFYWHCLSPQGGGEPEGKLAVAINQAFGSFAEFKQQFSDAAVKNFG
CCCCCCCHHHHHCCEEEEEEECCCCCCCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHCC
AGWTWLVKKPEGSLAIVNTSNAATPLTGDDKPLLTVDVWEHAYYIDYRNARPAYLENFWA
CCEEEEEECCCCCEEEEECCCCCCCCCCCCCCEEEEEECCEEEEEEECCCCCHHHHHHHH
LVNWAFVEKNLA
HHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]