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The map label for this gene is sufD [H]

Identifier: 157370422

GI number: 157370422

Start: 2383057

End: 2384349

Strand: Direct

Name: sufD [H]

Synonym: Spro_2182

Alternate gene names: 157370422

Gene position: 2383057-2384349 (Clockwise)

Preceding gene: 157370421

Following gene: 157370423

Centisome position: 43.74

GC content: 58.47

Gene sequence:

>1293_bases
ATGGCTGGCTTACCGACGAGCAATAATTCGCGCGCGCTGCAGCAACTCTACAGTCTGTTTGAAGCCCGCGGCGGCGAGCA
CTCCGCCCATGCGCTGGCACACTGGCAACAGGCCTTGCGCCTGGGCTGGCCGACCCGCAAGCATGAAAACTGGAAATACA
CCCCGCTTGAAGGTTTGCTGGAGCAACAGTTTCTGGAGCCGCCACTCGAGCCGGTCACTGCCGCTCAGCGCGATGCATTG
GCGCTGGATATCGACGCTTACCGCCTGGTGTTTATCGACGGGCGTTTCAGCGCGGCATTGAGTGACAGCGAGCTGGGCGA
TTACCAGTTTGACGTGGCCCCCTACGGGACGCTACAGGCCTTGCCGGAGCCGATCCAGGCCGAAATATTCCTGCATCTGA
CCGAAAGTCTGGCGCAGGAAACCAGCATTATCCGCGTGGCGGCCGGCAAAATTGCAGAGCGGCCGTTGTATCTGCTGCAT
ATCAGCAGTGGACGCGGCGCTGAAGGCGAAGTGAATACCGTCCATCACCGCCATCATCTTGAGATTGCGCGTAATGCGCA
GGCTGAAGTGATCGAACATTACGTCAGCCTTAACGACGCCGCACATTTCACCGGCGCACGCCTGACCGCCAATGTGGGTG
ACAATGCTCAACTGCAGCACTGCAAACTGGCATTTGAAAGCCGGCCGAGCTACCACTTCGCCCATAACGATCTGGTGATT
GGCCGCGATGCGCGGGTGAAGAGTGACAGTTTCCTGCTCGGGGCGGGGCTGACGCGGCATAACACCAGCGCACAGCTGAA
TGGTGAAGGTTCCAACCTGACGATCAACAGCCTGGTGCTGCCGGTCGGTAAAGAGGTTTGCGATACCCGTACTTACCTGG
AGCACAACAAGGGTTACTGCGAGAGCCGCCAACTGCACAAAGTGGTGGTCAGCGATCGCGCCAAAGCGGTGTTTAACGGC
ATGATCAAAGTGGCCAAACATGCGATTAAAACCGATGGCCAGATGACCAACCACAATCTGCTGCTGGGCAAGGTGGCGGA
GGTAGATACCAAACCGCAACTGGAAATCTACGCTGACGACGTGAAGTGCAGTCACGGTGCTACCGTTGGGCGCATCGATG
AAGAGCAACTGTTTTATCTGCAATCGCGCGGTATCGACAAGCATGCGGCGCAGCAGATGATCATCTTTGCCTTTGCCGCG
GAGCTGACCGAGGGGATTGGCAACGACACCATCCGTGAATCGGTGTTGGCGCGGATTGCACAGCGCCTGGCGGGGCCGGG
GGAGGCAGCATGA

Upstream 100 bases:

>100_bases
CTGGACTACATCAAACCGGATTACGTTCATGTTCTTTCTCAGGGGCGCATCGTCAAATCCGGCGATTTCACCCTGGTGAA
ACAGTTGGAGGAGCAGGGCT

Downstream 100 bases:

>100_bases
GTTTTCCGATTGAACGGGTACGCAGTGAATTTCCGCTGTTGGCACGAGAAGTCAATGGCCAGCCGCTGGCTTACCTCGAC
AGTGCCGCCAGCGCGCAGAA

Product: FeS assembly protein SufD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 430; Mature: 429

Protein sequence:

>430_residues
MAGLPTSNNSRALQQLYSLFEARGGEHSAHALAHWQQALRLGWPTRKHENWKYTPLEGLLEQQFLEPPLEPVTAAQRDAL
ALDIDAYRLVFIDGRFSAALSDSELGDYQFDVAPYGTLQALPEPIQAEIFLHLTESLAQETSIIRVAAGKIAERPLYLLH
ISSGRGAEGEVNTVHHRHHLEIARNAQAEVIEHYVSLNDAAHFTGARLTANVGDNAQLQHCKLAFESRPSYHFAHNDLVI
GRDARVKSDSFLLGAGLTRHNTSAQLNGEGSNLTINSLVLPVGKEVCDTRTYLEHNKGYCESRQLHKVVVSDRAKAVFNG
MIKVAKHAIKTDGQMTNHNLLLGKVAEVDTKPQLEIYADDVKCSHGATVGRIDEEQLFYLQSRGIDKHAAQQMIIFAFAA
ELTEGIGNDTIRESVLARIAQRLAGPGEAA

Sequences:

>Translated_430_residues
MAGLPTSNNSRALQQLYSLFEARGGEHSAHALAHWQQALRLGWPTRKHENWKYTPLEGLLEQQFLEPPLEPVTAAQRDAL
ALDIDAYRLVFIDGRFSAALSDSELGDYQFDVAPYGTLQALPEPIQAEIFLHLTESLAQETSIIRVAAGKIAERPLYLLH
ISSGRGAEGEVNTVHHRHHLEIARNAQAEVIEHYVSLNDAAHFTGARLTANVGDNAQLQHCKLAFESRPSYHFAHNDLVI
GRDARVKSDSFLLGAGLTRHNTSAQLNGEGSNLTINSLVLPVGKEVCDTRTYLEHNKGYCESRQLHKVVVSDRAKAVFNG
MIKVAKHAIKTDGQMTNHNLLLGKVAEVDTKPQLEIYADDVKCSHGATVGRIDEEQLFYLQSRGIDKHAAQQMIIFAFAA
ELTEGIGNDTIRESVLARIAQRLAGPGEAA
>Mature_429_residues
AGLPTSNNSRALQQLYSLFEARGGEHSAHALAHWQQALRLGWPTRKHENWKYTPLEGLLEQQFLEPPLEPVTAAQRDALA
LDIDAYRLVFIDGRFSAALSDSELGDYQFDVAPYGTLQALPEPIQAEIFLHLTESLAQETSIIRVAAGKIAERPLYLLHI
SSGRGAEGEVNTVHHRHHLEIARNAQAEVIEHYVSLNDAAHFTGARLTANVGDNAQLQHCKLAFESRPSYHFAHNDLVIG
RDARVKSDSFLLGAGLTRHNTSAQLNGEGSNLTINSLVLPVGKEVCDTRTYLEHNKGYCESRQLHKVVVSDRAKAVFNGM
IKVAKHAIKTDGQMTNHNLLLGKVAEVDTKPQLEIYADDVKCSHGATVGRIDEEQLFYLQSRGIDKHAAQQMIIFAFAAE
LTEGIGNDTIRESVLARIAQRLAGPGEAA

Specific function: The sufBCD complex acts synergistically with sufE to stimulate the cysteine desulfurase activity of sufS. The sufBCD complex contributes to the assembly or repair of oxygen-labile iron-sulfur clusters under oxidative stress. May facilitate iron uptake fro

COG id: COG0719

COG function: function code O; ABC-type transport system involved in Fe-S cluster assembly, permease component

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0051 (ycf24) family [H]

Homologues:

Organism=Escherichia coli, GI1787971, Length=425, Percent_Identity=64.2352941176471, Blast_Score=535, Evalue=1e-153,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000825
- InterPro:   IPR011542 [H]

Pfam domain/function: PF01458 UPF0051 [H]

EC number: NA

Molecular weight: Translated: 47377; Mature: 47246

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAGLPTSNNSRALQQLYSLFEARGGEHSAHALAHWQQALRLGWPTRKHENWKYTPLEGLL
CCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHH
EQQFLEPPLEPVTAAQRDALALDIDAYRLVFIDGRFSAALSDSELGDYQFDVAPYGTLQA
HHHHCCCCCCHHHHHCCCCEEEEECCEEEEEEECCCCEECCCCCCCCEEEECCCCCHHHH
LPEPIQAEIFLHLTESLAQETSIIRVAAGKIAERPLYLLHISSGRGAEGEVNTVHHRHHL
CCCCHHHHHHHHHHHHHHHHHHEEEEEHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHH
EIARNAQAEVIEHYVSLNDAAHFTGARLTANVGDNAQLQHCKLAFESRPSYHFAHNDLVI
HHHHCCHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCHHHHEEHHCCCCCEEEECCCEEE
GRDARVKSDSFLLGAGLTRHNTSAQLNGEGSNLTINSLVLPVGKEVCDTRTYLEHNKGYC
CCCCCCCCCCEEEECCCEECCCCEEECCCCCCEEEEEEEECCCHHHHHHHHHHHCCCCCC
ESRQLHKVVVSDRAKAVFNGMIKVAKHAIKTDGQMTNHNLLLGKVAEVDTKPQLEIYADD
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEHHCCCCCCCEEEEECC
VKCSHGATVGRIDEEQLFYLQSRGIDKHAAQQMIIFAFAAELTEGIGNDTIRESVLARIA
EECCCCCEECCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
QRLAGPGEAA
HHHCCCCCCC
>Mature Secondary Structure 
AGLPTSNNSRALQQLYSLFEARGGEHSAHALAHWQQALRLGWPTRKHENWKYTPLEGLL
CCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHH
EQQFLEPPLEPVTAAQRDALALDIDAYRLVFIDGRFSAALSDSELGDYQFDVAPYGTLQA
HHHHCCCCCCHHHHHCCCCEEEEECCEEEEEEECCCCEECCCCCCCCEEEECCCCCHHHH
LPEPIQAEIFLHLTESLAQETSIIRVAAGKIAERPLYLLHISSGRGAEGEVNTVHHRHHL
CCCCHHHHHHHHHHHHHHHHHHEEEEEHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHH
EIARNAQAEVIEHYVSLNDAAHFTGARLTANVGDNAQLQHCKLAFESRPSYHFAHNDLVI
HHHHCCHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCHHHHEEHHCCCCCEEEECCCEEE
GRDARVKSDSFLLGAGLTRHNTSAQLNGEGSNLTINSLVLPVGKEVCDTRTYLEHNKGYC
CCCCCCCCCCEEEECCCEECCCCEEECCCCCCEEEEEEEECCCHHHHHHHHHHHCCCCCC
ESRQLHKVVVSDRAKAVFNGMIKVAKHAIKTDGQMTNHNLLLGKVAEVDTKPQLEIYADD
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEHHCCCCCCCEEEEECC
VKCSHGATVGRIDEEQLFYLQSRGIDKHAAQQMIIFAFAAELTEGIGNDTIRESVLARIA
EECCCCCEECCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
QRLAGPGEAA
HHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503; 10322040 [H]