| Definition | Serratia proteamaculans 568 chromosome, complete genome. |
|---|---|
| Accession | NC_009832 |
| Length | 5,448,853 |
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The map label for this gene is thrS
Identifier: 157370384
GI number: 157370384
Start: 2339740
End: 2341668
Strand: Direct
Name: thrS
Synonym: Spro_2144
Alternate gene names: 157370384
Gene position: 2339740-2341668 (Clockwise)
Preceding gene: 157370383
Following gene: 157370385
Centisome position: 42.94
GC content: 51.63
Gene sequence:
>1929_bases ATGCCTGTTATTACTCTTCCTGACGGAAGTCAGCGTCATTTCGATCACCCTGTTTCCCCTTTGGATGTTGCCCGCGATAT CGGCCCTGGCCTGGCGAAAGCCTGTATTGCCGGCCGTGTAAACGGTGAATTGGTTGATGCCGGCGATCTGATCGAATCAG ATGCGCAACTGGCGATCATCACCATCAAGGACGCCGAAGGCCTGGAAATCATGCGCCACTCCTGTGCGCACCTGCTGGGT CATGCGATCAAACAACTGTGGCCAGACACCAAAATGGCGATCGGTCCAGTGATCGACAATGGTTTCTATTATGACGTTGA TATTGACCGTACCCTGACACAGGAAGACCTGGATCTGCTGGAAAAGCGGATGCATGAGTTGGCCGACAAAGATTATGACG TCATCAAGAAAAAGGTTAGCTGGCAAGAAGCTCGCGATACCTTTGCTGCGCGTGGTGAAGACTACAAAGTGGCAATTCTG GATGAGAACATCAGCCATGACGACCGTCCTGGCCTGTATCACCATGAAGAATATGTCGACATGTGCCGTGGGCCGCACGT GCCGAACATGCGTTTCTGCCATCATTTCAAACTGCAGAAAACTTCGGGCGCGTACTGGCGTGGCGACAGCAAAAATAAAA TGCTGCAACGCATCTACGGTACTGCCTGGGCAGACAAGAAACAGCTGAATGCCTACCTGCAGCGTCTGGAAGAAGCCGCC AAGCGTGACCACCGCAAGATCGGTAAGCAGCTCGACCTGTACCATATGCAGGAAGAAGCGCCGGGCATGGTGTTCTGGCA CAACGATGGCTGGACTATTTTCCGCGAGCTGGAAGCCTTTGTGCGCATGAAGCTCAAGGAATACCAGTATCAGGAAGTGA AAGGGCCATTTATGATGGACCGTGTGCTGTGGGAAAAAACCGGCCACTGGGAAAACTATAAAGACGCCATGTTCACCACC TCGTCGGAAAACCGCGAGTATTGCATCAAGCCGATGAACTGCCCGGGTCACGTGCAGATCTTCAATCAGGGCCTGAAGTC TTACCGCGATTTGCCGCTGCGTATGGGCGAATTCGGCAGTTGCCATCGTAACGAGCCTTCGGGTTCTCTGCATGGCCTGA TGCGCGTGCGTGGTTTCACCCAGGATGACGCCCATATCTTCTGTACTGAAGAGCAGGTGCGTGCCGAAGTGAACGAATGC ATCAGAATGGTCTATGATGTGTACGGCACCTTTGGCTTCGACAAGATTGCGGTAAAACTTTCTACCCGTCCTGAGAAGCG CATTGGTACTGACGATATGTGGACCCGTGCGGAAGAAGATCTGGCCGCTGCGCTGACTGAAAACGGGATTCCGTTTGAAT ATCAGCCGGGTGAGGGTGCCTTCTACGGACCAAAAATTGAATTTACTCTGCATGATTGTTTGGATCGTGCATGGCAATGT GGTACCGTGCAGCTCGATTTCTTCTTACCGGGCCGTTTAGGCGCATCGTATGTTGGCGAAAACAACGATCGCGTGGTCCC GGTAATGATTCACCGTGCTATTTTGGGCTCCATGGAGCGTTTCATCGGTATCCTTACCGAAGAATACGCAGGGTTCTACC CAACCTGGATTGCTCCGGTACAGGTGGTGGTGATGAATATCACCGACAGCCAGTCTGATTATGTCCAGCAATTGACCAAA AAATTGCAGGACGCAGGTATTCGCGTTAAAGCGGACTTGAGAAATGAGAAGATTGGCTTTAAAATTCGCGAACATACTTT ACGACGGGTTCCTTACATGTTGGTGTGCGGTGATAAAGAGGTCGAATCAGGCAAAGTTGCCGTTCGTACCCGCCGTGGCA AAGACCTGGGAAGCCTGGACGTAAATGAAGTCGTAGACAAGCTGCTAAAAGAGATTCGCAGCCGTAGTCTTCATCAACTG GAGGAATAA
Upstream 100 bases:
>100_bases TGTGGGCGAGATCTGAAACCTAACTGACTAAATCCCAACCCAATTTTCGTACTGCATGTGATCTGTCGTGTGGGTCACCA CTGTAGATAAGGAATTATTA
Downstream 100 bases:
>100_bases AGTATTAAAGGCGGAAAACGAGTTCAACCGGCGCGTCCTAATCGCATTAACAGAGAAATTCGCGCGCAAGAAGTTCGCCT AACCGGCGTCGATGGCGAGC
Product: threonyl-tRNA synthetase
Products: NA
Alternate protein names: Threonine--tRNA ligase; ThrRS
Number of amino acids: Translated: 642; Mature: 641
Protein sequence:
>642_residues MPVITLPDGSQRHFDHPVSPLDVARDIGPGLAKACIAGRVNGELVDAGDLIESDAQLAIITIKDAEGLEIMRHSCAHLLG HAIKQLWPDTKMAIGPVIDNGFYYDVDIDRTLTQEDLDLLEKRMHELADKDYDVIKKKVSWQEARDTFAARGEDYKVAIL DENISHDDRPGLYHHEEYVDMCRGPHVPNMRFCHHFKLQKTSGAYWRGDSKNKMLQRIYGTAWADKKQLNAYLQRLEEAA KRDHRKIGKQLDLYHMQEEAPGMVFWHNDGWTIFRELEAFVRMKLKEYQYQEVKGPFMMDRVLWEKTGHWENYKDAMFTT SSENREYCIKPMNCPGHVQIFNQGLKSYRDLPLRMGEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIFCTEEQVRAEVNEC IRMVYDVYGTFGFDKIAVKLSTRPEKRIGTDDMWTRAEEDLAAALTENGIPFEYQPGEGAFYGPKIEFTLHDCLDRAWQC GTVQLDFFLPGRLGASYVGENNDRVVPVMIHRAILGSMERFIGILTEEYAGFYPTWIAPVQVVVMNITDSQSDYVQQLTK KLQDAGIRVKADLRNEKIGFKIREHTLRRVPYMLVCGDKEVESGKVAVRTRRGKDLGSLDVNEVVDKLLKEIRSRSLHQL EE
Sequences:
>Translated_642_residues MPVITLPDGSQRHFDHPVSPLDVARDIGPGLAKACIAGRVNGELVDAGDLIESDAQLAIITIKDAEGLEIMRHSCAHLLG HAIKQLWPDTKMAIGPVIDNGFYYDVDIDRTLTQEDLDLLEKRMHELADKDYDVIKKKVSWQEARDTFAARGEDYKVAIL DENISHDDRPGLYHHEEYVDMCRGPHVPNMRFCHHFKLQKTSGAYWRGDSKNKMLQRIYGTAWADKKQLNAYLQRLEEAA KRDHRKIGKQLDLYHMQEEAPGMVFWHNDGWTIFRELEAFVRMKLKEYQYQEVKGPFMMDRVLWEKTGHWENYKDAMFTT SSENREYCIKPMNCPGHVQIFNQGLKSYRDLPLRMGEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIFCTEEQVRAEVNEC IRMVYDVYGTFGFDKIAVKLSTRPEKRIGTDDMWTRAEEDLAAALTENGIPFEYQPGEGAFYGPKIEFTLHDCLDRAWQC GTVQLDFFLPGRLGASYVGENNDRVVPVMIHRAILGSMERFIGILTEEYAGFYPTWIAPVQVVVMNITDSQSDYVQQLTK KLQDAGIRVKADLRNEKIGFKIREHTLRRVPYMLVCGDKEVESGKVAVRTRRGKDLGSLDVNEVVDKLLKEIRSRSLHQL EE >Mature_641_residues PVITLPDGSQRHFDHPVSPLDVARDIGPGLAKACIAGRVNGELVDAGDLIESDAQLAIITIKDAEGLEIMRHSCAHLLGH AIKQLWPDTKMAIGPVIDNGFYYDVDIDRTLTQEDLDLLEKRMHELADKDYDVIKKKVSWQEARDTFAARGEDYKVAILD ENISHDDRPGLYHHEEYVDMCRGPHVPNMRFCHHFKLQKTSGAYWRGDSKNKMLQRIYGTAWADKKQLNAYLQRLEEAAK RDHRKIGKQLDLYHMQEEAPGMVFWHNDGWTIFRELEAFVRMKLKEYQYQEVKGPFMMDRVLWEKTGHWENYKDAMFTTS SENREYCIKPMNCPGHVQIFNQGLKSYRDLPLRMGEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIFCTEEQVRAEVNECI RMVYDVYGTFGFDKIAVKLSTRPEKRIGTDDMWTRAEEDLAAALTENGIPFEYQPGEGAFYGPKIEFTLHDCLDRAWQCG TVQLDFFLPGRLGASYVGENNDRVVPVMIHRAILGSMERFIGILTEEYAGFYPTWIAPVQVVVMNITDSQSDYVQQLTKK LQDAGIRVKADLRNEKIGFKIREHTLRRVPYMLVCGDKEVESGKVAVRTRRGKDLGSLDVNEVVDKLLKEIRSRSLHQLE E
Specific function: Thrs Is Also A Translational Repressor Protein, It Controls The Translation Of Its Own Gene By Binding To Its mRNA. [C]
COG id: COG0441
COG function: function code J; Threonyl-tRNA synthetase
Gene ontology:
Cell location: Cytoplasm
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the class-II aminoacyl-tRNA synthetase family
Homologues:
Organism=Homo sapiens, GI38570111, Length=627, Percent_Identity=38.5964912280702, Blast_Score=452, Evalue=1e-127, Organism=Homo sapiens, GI38202255, Length=643, Percent_Identity=38.4136858475894, Blast_Score=444, Evalue=1e-124, Organism=Homo sapiens, GI20070344, Length=653, Percent_Identity=35.5283307810107, Blast_Score=394, Evalue=1e-109, Organism=Escherichia coli, GI1788013, Length=642, Percent_Identity=88.785046728972, Blast_Score=1215, Evalue=0.0, Organism=Caenorhabditis elegans, GI71984184, Length=629, Percent_Identity=37.3608903020668, Blast_Score=451, Evalue=1e-127, Organism=Caenorhabditis elegans, GI71984192, Length=629, Percent_Identity=37.3608903020668, Blast_Score=451, Evalue=1e-127, Organism=Saccharomyces cerevisiae, GI6322112, Length=650, Percent_Identity=36.3076923076923, Blast_Score=436, Evalue=1e-123, Organism=Saccharomyces cerevisiae, GI6322654, Length=415, Percent_Identity=37.5903614457831, Blast_Score=297, Evalue=4e-81, Organism=Drosophila melanogaster, GI24583842, Length=630, Percent_Identity=40, Blast_Score=490, Evalue=1e-138, Organism=Drosophila melanogaster, GI28574141, Length=630, Percent_Identity=40, Blast_Score=490, Evalue=1e-138, Organism=Drosophila melanogaster, GI24583839, Length=630, Percent_Identity=40, Blast_Score=490, Evalue=1e-138,
Paralogues:
None
Copy number: 700 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): SYT_SERP5 (A8GDQ5)
Other databases:
- EMBL: CP000826 - RefSeq: YP_001478373.1 - ProteinModelPortal: A8GDQ5 - SMR: A8GDQ5 - STRING: A8GDQ5 - GeneID: 5605934 - GenomeReviews: CP000826_GR - KEGG: spe:Spro_2144 - eggNOG: COG0441 - HOGENOM: HBG352811 - OMA: TAKDPEC - ProtClustDB: PRK00413 - BioCyc: SPRO399741:SPRO_2144-MONOMER - GO: GO:0005737 - HAMAP: MF_00184_B - InterPro: IPR002314 - InterPro: IPR006195 - InterPro: IPR004154 - InterPro: IPR012675 - InterPro: IPR004095 - InterPro: IPR012676 - InterPro: IPR002320 - InterPro: IPR018163 - InterPro: IPR012947 - Gene3D: G3DSA:3.40.50.800 - Gene3D: G3DSA:3.10.20.30 - PRINTS: PR01047 - SMART: SM00863 - TIGRFAMs: TIGR00418
Pfam domain/function: PF03129 HGTP_anticodon; PF02824 TGS; PF00587 tRNA-synt_2b; PF07973 tRNA_SAD; SSF52954 Anticodon_bd; SSF81271 TGS-like; SSF55186 Thr/Ala-tRNA-synth_IIc_edit
EC number: =6.1.1.3
Molecular weight: Translated: 73830; Mature: 73699
Theoretical pI: Translated: 6.31; Mature: 6.31
Prosite motif: PS50862 AA_TRNA_LIGASE_II
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 5.3 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 3.3 %Met (Mature Protein) 5.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPVITLPDGSQRHFDHPVSPLDVARDIGPGLAKACIAGRVNGELVDAGDLIESDAQLAII CCEEECCCCCCCCCCCCCCHHHHHHHCCHHHHHHHHHCCCCCCEECCCHHHCCCCCEEEE TIKDAEGLEIMRHSCAHLLGHAIKQLWPDTKMAIGPVIDNGFYYDVDIDRTLTQEDLDLL EEECCCCHHHHHHHHHHHHHHHHHHHCCCCCEEECCEECCCEEEEEECCCCCCHHHHHHH EKRMHELADKDYDVIKKKVSWQEARDTFAARGEDYKVAILDENISHDDRPGLYHHEEYVD HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCHHHHH MCRGPHVPNMRFCHHFKLQKTSGAYWRGDSKNKMLQRIYGTAWADKKQLNAYLQRLEEAA HHCCCCCCCCHHHHEEEEECCCCCEECCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH KRDHRKIGKQLDLYHMQEEAPGMVFWHNDGWTIFRELEAFVRMKLKEYQYQEVKGPFMMD HHHHHHHCCHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH RVLWEKTGHWENYKDAMFTTSSENREYCIKPMNCPGHVQIFNQGLKSYRDLPLRMGEFGS HHHHHHCCCCCCCCCCEEECCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCC CHRNEPSGSLHGLMRVRGFTQDDAHIFCTEEQVRAEVNECIRMVYDVYGTFGFDKIAVKL CCCCCCCHHHHHHHHHCCCCCCCCEEEECHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEE STRPEKRIGTDDMWTRAEEDLAAALTENGIPFEYQPGEGAFYGPKIEFTLHDCLDRAWQC CCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCEECCEEEEEHHHHHHHHHCC GTVQLDFFLPGRLGASYVGENNDRVVPVMIHRAILGSMERFIGILTEEYAGFYPTWIAPV CEEEEEEEECCCCCCHHCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCE QVVVMNITDSQSDYVQQLTKKLQDAGIRVKADLRNEKIGFKIREHTLRRVPYMLVCGDKE EEEEEECCCCHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCHHHHHHHHCCEEEEECCCC VESGKVAVRTRRGKDLGSLDVNEVVDKLLKEIRSRSLHQLEE CCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure PVITLPDGSQRHFDHPVSPLDVARDIGPGLAKACIAGRVNGELVDAGDLIESDAQLAII CEEECCCCCCCCCCCCCCHHHHHHHCCHHHHHHHHHCCCCCCEECCCHHHCCCCCEEEE TIKDAEGLEIMRHSCAHLLGHAIKQLWPDTKMAIGPVIDNGFYYDVDIDRTLTQEDLDLL EEECCCCHHHHHHHHHHHHHHHHHHHCCCCCEEECCEECCCEEEEEECCCCCCHHHHHHH EKRMHELADKDYDVIKKKVSWQEARDTFAARGEDYKVAILDENISHDDRPGLYHHEEYVD HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCHHHHH MCRGPHVPNMRFCHHFKLQKTSGAYWRGDSKNKMLQRIYGTAWADKKQLNAYLQRLEEAA HHCCCCCCCCHHHHEEEEECCCCCEECCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH KRDHRKIGKQLDLYHMQEEAPGMVFWHNDGWTIFRELEAFVRMKLKEYQYQEVKGPFMMD HHHHHHHCCHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH RVLWEKTGHWENYKDAMFTTSSENREYCIKPMNCPGHVQIFNQGLKSYRDLPLRMGEFGS HHHHHHCCCCCCCCCCEEECCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCC CHRNEPSGSLHGLMRVRGFTQDDAHIFCTEEQVRAEVNECIRMVYDVYGTFGFDKIAVKL CCCCCCCHHHHHHHHHCCCCCCCCEEEECHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEE STRPEKRIGTDDMWTRAEEDLAAALTENGIPFEYQPGEGAFYGPKIEFTLHDCLDRAWQC CCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCEECCEEEEEHHHHHHHHHCC GTVQLDFFLPGRLGASYVGENNDRVVPVMIHRAILGSMERFIGILTEEYAGFYPTWIAPV CEEEEEEEECCCCCCHHCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCE QVVVMNITDSQSDYVQQLTKKLQDAGIRVKADLRNEKIGFKIREHTLRRVPYMLVCGDKE EEEEEECCCCHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCHHHHHHHHCCEEEEECCCC VESGKVAVRTRRGKDLGSLDVNEVVDKLLKEIRSRSLHQLEE CCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA