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The map label for this gene is ycfD [H]

Identifier: 157370253

GI number: 157370253

Start: 2203400

End: 2204521

Strand: Reverse

Name: ycfD [H]

Synonym: Spro_2011

Alternate gene names: 157370253

Gene position: 2204521-2203400 (Counterclockwise)

Preceding gene: 157370254

Following gene: 157370250

Centisome position: 40.46

GC content: 57.58

Gene sequence:

>1122_bases
ATGGATTATCAATTAGATCTGGACTGGAACGATTTTTTGCAACGTTATTGGCAAAAGCGTCCGGTGATTCTGAAGCGTGG
CTTCAAAAACTTTATCGATCCGATCTCCCCGGATGAGCTGGCTGGGCTGGCGATGGAAAACGAAGTGGACAGCCGTTTGG
TTAGCCACCAGGACGGCCGCTGGCAGGTCGCTCACGGCCCATTTGAGAGCTTTGACCACCTGAGCGAGAACAACTGGTCG
CTGCTGGTGCAGGCAGTCGATCACTGGCATGAGCCTTCCAGCGCGCTGATGCGCCCGTTCCGCCAACTGCCGGACTGGCG
GATGGACGATCTGATGATTTCGTTCTCGGTGCCGGGCGGCGGTGTTGGCCCGCATTTCGATCAGTACGACGTGTTTATCA
TTCAGGGTACCGGTCGCCGTCGCTGGCGCGTGGGCGAAAAAGTGCCGATGAAGCAGCATTGCCCGCACCCGGACCTGCTG
CAGGTTGAACCTTTCGACGCCATTATCGATGAAGAAATGGAACCGGGCGATATTCTGTATATTCCGCCGGGCTTCCCGCA
TGAAGGCTACGCGTTGGAAAACGCGCTGAACTACTCGGTGGGCTTCCGCGCACCGAATGGTCGTGAACTGATTAGCGGCT
TTGCCGACCACGTGCTGGCACGCGAACTGGGCAGCAAACGTTACAGCGATCCGGATATTCAACTGCGAGAGCATCCAGCG
CAAGTGCTGCCGCAGGAAGTCGACGCCCTGCGCCAGATGATGCTGGATCTGGTTGAGCAACCGGAACACTTCCAGCAGTG
GTTCGGCGAGTTTATCTCCCAAACGCGCCACGAGCTGGATGCCGCGCCGCCGGAGCCGCCTTACCAGGCAGGCGAAATCT
ACGAACTGCTACAGCAGGGCGAGCCATTACAACGTCTGGGTGGCCTGCGCGTACTGCGCGTTGGTGATCAGTGCTTTGTG
AACGGCGAACTGATGGATACCGAGCATCTGCAGGCTGTCGATGCCATGTGCCAGAACTTCAGCGTTAATGCCACCCAGTT
GGGTGACGCGGTGGACGATCCGTCGTTCCTGGCGCTGCTGACCGCACTGATCAATAACGGCTACTGGTATTTTAAAGACT
GA

Upstream 100 bases:

>100_bases
CCACCATAACGAGTAAATTCTGTTGCTCAGGCCCCGATCCACGGGGCCAAACTTCCGTTATAATCGCACTCAGGCTCACT
CCTCTATCCTGGAATAGAAC

Downstream 100 bases:

>100_bases
AGCTGAAGTCATTCTGATAAAGCCACCCGCCCCCAGGCGAGTGGCTTTTTTTATGCTCGCAGCGCCTGTGTCAGGTAAGC
ATCAAGCTCCTCGTCAGGCA

Product: cupin 4 family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 373; Mature: 373

Protein sequence:

>373_residues
MDYQLDLDWNDFLQRYWQKRPVILKRGFKNFIDPISPDELAGLAMENEVDSRLVSHQDGRWQVAHGPFESFDHLSENNWS
LLVQAVDHWHEPSSALMRPFRQLPDWRMDDLMISFSVPGGGVGPHFDQYDVFIIQGTGRRRWRVGEKVPMKQHCPHPDLL
QVEPFDAIIDEEMEPGDILYIPPGFPHEGYALENALNYSVGFRAPNGRELISGFADHVLARELGSKRYSDPDIQLREHPA
QVLPQEVDALRQMMLDLVEQPEHFQQWFGEFISQTRHELDAAPPEPPYQAGEIYELLQQGEPLQRLGGLRVLRVGDQCFV
NGELMDTEHLQAVDAMCQNFSVNATQLGDAVDDPSFLALLTALINNGYWYFKD

Sequences:

>Translated_373_residues
MDYQLDLDWNDFLQRYWQKRPVILKRGFKNFIDPISPDELAGLAMENEVDSRLVSHQDGRWQVAHGPFESFDHLSENNWS
LLVQAVDHWHEPSSALMRPFRQLPDWRMDDLMISFSVPGGGVGPHFDQYDVFIIQGTGRRRWRVGEKVPMKQHCPHPDLL
QVEPFDAIIDEEMEPGDILYIPPGFPHEGYALENALNYSVGFRAPNGRELISGFADHVLARELGSKRYSDPDIQLREHPA
QVLPQEVDALRQMMLDLVEQPEHFQQWFGEFISQTRHELDAAPPEPPYQAGEIYELLQQGEPLQRLGGLRVLRVGDQCFV
NGELMDTEHLQAVDAMCQNFSVNATQLGDAVDDPSFLALLTALINNGYWYFKD
>Mature_373_residues
MDYQLDLDWNDFLQRYWQKRPVILKRGFKNFIDPISPDELAGLAMENEVDSRLVSHQDGRWQVAHGPFESFDHLSENNWS
LLVQAVDHWHEPSSALMRPFRQLPDWRMDDLMISFSVPGGGVGPHFDQYDVFIIQGTGRRRWRVGEKVPMKQHCPHPDLL
QVEPFDAIIDEEMEPGDILYIPPGFPHEGYALENALNYSVGFRAPNGRELISGFADHVLARELGSKRYSDPDIQLREHPA
QVLPQEVDALRQMMLDLVEQPEHFQQWFGEFISQTRHELDAAPPEPPYQAGEIYELLQQGEPLQRLGGLRVLRVGDQCFV
NGELMDTEHLQAVDAMCQNFSVNATQLGDAVDDPSFLALLTALINNGYWYFKD

Specific function: Unknown

COG id: COG2850

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 JmjC domain [H]

Homologues:

Organism=Escherichia coli, GI87081836, Length=372, Percent_Identity=77.6881720430108, Blast_Score=621, Evalue=1e-179,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013109
- InterPro:   IPR022777
- InterPro:   IPR014710
- InterPro:   IPR003347 [H]

Pfam domain/function: PF08007 Cupin_4 [H]

EC number: NA

Molecular weight: Translated: 42864; Mature: 42864

Theoretical pI: Translated: 4.43; Mature: 4.43

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDYQLDLDWNDFLQRYWQKRPVILKRGFKNFIDPISPDELAGLAMENEVDSRLVSHQDGR
CCEEECCCHHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCC
WQVAHGPFESFDHLSENNWSLLVQAVDHWHEPSSALMRPFRQLPDWRMDDLMISFSVPGG
EEECCCCHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCEEEEEECCCC
GVGPHFDQYDVFIIQGTGRRRWRVGEKVPMKQHCPHPDLLQVEPFDAIIDEEMEPGDILY
CCCCCCCCEEEEEEECCCCCCCCCCCCCCHHHCCCCCCCEEECCHHHHHCCCCCCCCEEE
IPPGFPHEGYALENALNYSVGFRAPNGRELISGFADHVLARELGSKRYSDPDIQLREHPA
ECCCCCCCCCHHHHHHCCEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEECCCCH
QVLPQEVDALRQMMLDLVEQPEHFQQWFGEFISQTRHELDAAPPEPPYQAGEIYELLQQG
HHCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCC
EPLQRLGGLRVLRVGDQCFVNGELMDTEHLQAVDAMCQNFSVNATQLGDAVDDPSFLALL
CHHHHHCCEEEEEECCEEEECCCCCCHHHHHHHHHHHHCCCCCHHHHCCCCCCHHHHHHH
TALINNGYWYFKD
HHHHHCCEEEECC
>Mature Secondary Structure
MDYQLDLDWNDFLQRYWQKRPVILKRGFKNFIDPISPDELAGLAMENEVDSRLVSHQDGR
CCEEECCCHHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCC
WQVAHGPFESFDHLSENNWSLLVQAVDHWHEPSSALMRPFRQLPDWRMDDLMISFSVPGG
EEECCCCHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCEEEEEECCCC
GVGPHFDQYDVFIIQGTGRRRWRVGEKVPMKQHCPHPDLLQVEPFDAIIDEEMEPGDILY
CCCCCCCCEEEEEEECCCCCCCCCCCCCCHHHCCCCCCCEEECCHHHHHCCCCCCCCEEE
IPPGFPHEGYALENALNYSVGFRAPNGRELISGFADHVLARELGSKRYSDPDIQLREHPA
ECCCCCCCCCHHHHHHCCEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEECCCCH
QVLPQEVDALRQMMLDLVEQPEHFQQWFGEFISQTRHELDAAPPEPPYQAGEIYELLQQG
HHCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCC
EPLQRLGGLRVLRVGDQCFVNGELMDTEHLQAVDAMCQNFSVNATQLGDAVDDPSFLALL
CHHHHHCCEEEEEECCEEEECCCCCCHHHHHHHHHHHHCCCCCHHHHCCCCCCHHHHHHH
TALINNGYWYFKD
HHHHHCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503; 1729240 [H]