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The map label for this gene is yeaM [H]

Identifier: 157370118

GI number: 157370118

Start: 2063610

End: 2064371

Strand: Reverse

Name: yeaM [H]

Synonym: Spro_1876

Alternate gene names: 157370118

Gene position: 2064371-2063610 (Counterclockwise)

Preceding gene: 157370123

Following gene: 157370116

Centisome position: 37.89

GC content: 60.37

Gene sequence:

>762_bases
ATGCTGCTTTTCCATGACGCTGTGCCCGCCAACCGGTCGATTGTGCCGGTTGCCAAAGATTATCAGCACGGCGATTTCGA
GCCGCCCCACTACCATGACTGTGCGCAACTGATTCATAGCCTCAGCGGTGTGGTGCAGGTCAATACTCGTCAGGGAAGTT
GGGTGGTGCCCCCCGGACGCGGCGTCTGGCTACCGGCGAGGGTTGAACACAGCCTGCGTATCACCGGCAAGGTGGCCGCA
AGAGCGCTGTTGGTCGATCCGCTGGCGCGTGCCGATCTGCCGGCCTGTTGTGAAGTGGTACAGGTTTCCCCGTTACTGCG
TGAGCTGATTATCTGCGCGATGGATATCACGGCTGATTACCCCGTAGGGGGACGTGAAGAGCGAATAATGGAGTTGATCC
TGGATGAGCTGCGCGTGCTGCCTATCTTACCGCTGAATTTACCTGAGCCGCGTACTGAGGCCCTGCTGAGGCTGTGCCGG
CATATTCAGCAATCGCTGGCCCATCCCTGGGAATTAGAGCAGGCAGCCGGTTATATCAGCGTTAGCGGCCGCACGCTGTC
ACGGCGCTTTCAGCGTGAAACCGGACTGCGCTTCGGTGACTGGGTGCGCCGCGCCCGTTTGCTGGCGGCATTGAACGCCC
TGGCCGCCGGGCATTCGGTGCTGGAAGTGGCGCTGAGTCTGGGTTACGACAGCCCCAGTGCTTTCAGCGCCATGTTCCGT
CGCCTGCTAGGCGTTGCGCCCAGTGCTTATTTTGCCAAATAG

Upstream 100 bases:

>100_bases
ATAAACTATATTCCTCCATCGCACCATAGACTGGTGCGAAAGGTTTCAGCATGGCATGCTGCCGTTACGATTTTTCCGCG
GACAGGGGATGCCCCGAACA

Downstream 100 bases:

>100_bases
CGTGCGGCAACGTTGAACAGTGCCTGCAGCGAGGCGCTGGCGGAATCGACGTCGATGCCCACGCCATAAGCCGCCTCACC
GTGCGCTAGCGTACAGCGGA

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 253; Mature: 253

Protein sequence:

>253_residues
MLLFHDAVPANRSIVPVAKDYQHGDFEPPHYHDCAQLIHSLSGVVQVNTRQGSWVVPPGRGVWLPARVEHSLRITGKVAA
RALLVDPLARADLPACCEVVQVSPLLRELIICAMDITADYPVGGREERIMELILDELRVLPILPLNLPEPRTEALLRLCR
HIQQSLAHPWELEQAAGYISVSGRTLSRRFQRETGLRFGDWVRRARLLAALNALAAGHSVLEVALSLGYDSPSAFSAMFR
RLLGVAPSAYFAK

Sequences:

>Translated_253_residues
MLLFHDAVPANRSIVPVAKDYQHGDFEPPHYHDCAQLIHSLSGVVQVNTRQGSWVVPPGRGVWLPARVEHSLRITGKVAA
RALLVDPLARADLPACCEVVQVSPLLRELIICAMDITADYPVGGREERIMELILDELRVLPILPLNLPEPRTEALLRLCR
HIQQSLAHPWELEQAAGYISVSGRTLSRRFQRETGLRFGDWVRRARLLAALNALAAGHSVLEVALSLGYDSPSAFSAMFR
RLLGVAPSAYFAK
>Mature_253_residues
MLLFHDAVPANRSIVPVAKDYQHGDFEPPHYHDCAQLIHSLSGVVQVNTRQGSWVVPPGRGVWLPARVEHSLRITGKVAA
RALLVDPLARADLPACCEVVQVSPLLRELIICAMDITADYPVGGREERIMELILDELRVLPILPLNLPEPRTEALLRLCR
HIQQSLAHPWELEQAAGYISVSGRTLSRRFQRETGLRFGDWVRRARLLAALNALAAGHSVLEVALSLGYDSPSAFSAMFR
RLLGVAPSAYFAK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788091, Length=226, Percent_Identity=34.070796460177, Blast_Score=126, Evalue=1e-30,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011051
- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018062
- InterPro:   IPR018060
- InterPro:   IPR014710 [H]

Pfam domain/function: PF02311 AraC_binding [H]

EC number: NA

Molecular weight: Translated: 28028; Mature: 28028

Theoretical pI: Translated: 8.24; Mature: 8.24

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLLFHDAVPANRSIVPVAKDYQHGDFEPPHYHDCAQLIHSLSGVVQVNTRQGSWVVPPGR
CEEECCCCCCCCCEECCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEEECCCCCEEECCCC
GVWLPARVEHSLRITGKVAARALLVDPLARADLPACCEVVQVSPLLRELIICAMDITADY
CEEEHHCCCCCEEEHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCC
PVGGREERIMELILDELRVLPILPLNLPEPRTEALLRLCRHIQQSLAHPWELEQAAGYIS
CCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHCCEEE
VSGRTLSRRFQRETGLRFGDWVRRARLLAALNALAAGHSVLEVALSLGYDSPSAFSAMFR
ECCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
RLLGVAPSAYFAK
HHHHCCCCHHHCC
>Mature Secondary Structure
MLLFHDAVPANRSIVPVAKDYQHGDFEPPHYHDCAQLIHSLSGVVQVNTRQGSWVVPPGR
CEEECCCCCCCCCEECCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEEECCCCCEEECCCC
GVWLPARVEHSLRITGKVAARALLVDPLARADLPACCEVVQVSPLLRELIICAMDITADY
CEEEHHCCCCCEEEHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCC
PVGGREERIMELILDELRVLPILPLNLPEPRTEALLRLCRHIQQSLAHPWELEQAAGYIS
CCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHCCEEE
VSGRTLSRRFQRETGLRFGDWVRRARLLAALNALAAGHSVLEVALSLGYDSPSAFSAMFR
ECCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
RLLGVAPSAYFAK
HHHHCCCCHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]