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The map label for this gene is rhaS [H]

Identifier: 157370081

GI number: 157370081

Start: 2023997

End: 2024842

Strand: Reverse

Name: rhaS [H]

Synonym: Spro_1839

Alternate gene names: 157370081

Gene position: 2024842-2023997 (Counterclockwise)

Preceding gene: 157370086

Following gene: 157370080

Centisome position: 37.16

GC content: 57.09

Gene sequence:

>846_bases
ATGCGATTAGCCCAGGATCATCAGCTTGTTACGGCCTCCCGGCCGGTTATCGAGGAGCCGGAACAGGACATTTTTGCCGT
TGAACAACTGTCACGCTGGTGCGATGGCCTGGCACAACAGCGCCCGAACACCCTGCACGACCTGCTCAACTCTCTGGCTC
TGATCGCCCCGCTGCTCAATGCTATCCCCAACGTGGTGTTTTTTATCAAGGATCTGCAAGCGCGTTACCTGCTGGCCAAC
CTGACGTTGGCCAAGCGCTGCGGCTTTAAAACCGTCACGCCGCTACTGGGAAAAACCTCGGCGGAGGTGTTTCCGGCCCA
GCTTGGCTCGGGTTATACCGAACAGGATCTGCGTGTACTGCAGCAGGGAGCATTGATTCAGGACCAACTGGAAATGCACC
TGTACAGTGGGCGAGAGACCGGCTGGTGCCTGACACAAAAACTGGCGCTCTATGACGTTCAGGGCAAGATCATCGGTATG
GCCGGCATCTCGCACGATCTGCAGGAGGCCAAAGCAAACCATCCTGCCTATCAGCGACTGGCGGCGATCGACGTCTATAT
CCGTCAGCACTACGCCCGACCTATTGCCCTCGAGGAATTAACCGCCCTCACCGCCCTTTCCGTGGCGCAGATAGAGCGCT
ACTGCAAACGTATTTTCCACCTCACACCACGCCAGATGATCCACAAGGTGCGGCTGGAAAAAGCCACCGAACTGCTGGCC
AGCGATTTACCCATAACCGACATCGCCCTGCAGTGCGGTTACACCGATCACAGCGCATTCAGCCGCCAATTCAAAGCCAT
GACCGGCTCCACGCCACGTGACTTCCGCATTAGCATCACCTCATAA

Upstream 100 bases:

>100_bases
CTTGAAAAGTTATAAGAAAGTTAATATTGATGAGGCGCTTGCCAAACGGCCGGTCCGGCCACCTCAGATTCAGTGCCACC
CAGTGGGAAAAGGTATTGCC

Downstream 100 bases:

>100_bases
CAAACTGATTTATTTTATAAAAAAATTTATTTCGGCACTTTGACGGCCAGGTTTTTGCTTGCCTGATACTCTGCGCCACT
GTGCCAATTTCGTCATGGCA

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: L-rhamnose operon regulatory protein rhaS [H]

Number of amino acids: Translated: 281; Mature: 281

Protein sequence:

>281_residues
MRLAQDHQLVTASRPVIEEPEQDIFAVEQLSRWCDGLAQQRPNTLHDLLNSLALIAPLLNAIPNVVFFIKDLQARYLLAN
LTLAKRCGFKTVTPLLGKTSAEVFPAQLGSGYTEQDLRVLQQGALIQDQLEMHLYSGRETGWCLTQKLALYDVQGKIIGM
AGISHDLQEAKANHPAYQRLAAIDVYIRQHYARPIALEELTALTALSVAQIERYCKRIFHLTPRQMIHKVRLEKATELLA
SDLPITDIALQCGYTDHSAFSRQFKAMTGSTPRDFRISITS

Sequences:

>Translated_281_residues
MRLAQDHQLVTASRPVIEEPEQDIFAVEQLSRWCDGLAQQRPNTLHDLLNSLALIAPLLNAIPNVVFFIKDLQARYLLAN
LTLAKRCGFKTVTPLLGKTSAEVFPAQLGSGYTEQDLRVLQQGALIQDQLEMHLYSGRETGWCLTQKLALYDVQGKIIGM
AGISHDLQEAKANHPAYQRLAAIDVYIRQHYARPIALEELTALTALSVAQIERYCKRIFHLTPRQMIHKVRLEKATELLA
SDLPITDIALQCGYTDHSAFSRQFKAMTGSTPRDFRISITS
>Mature_281_residues
MRLAQDHQLVTASRPVIEEPEQDIFAVEQLSRWCDGLAQQRPNTLHDLLNSLALIAPLLNAIPNVVFFIKDLQARYLLAN
LTLAKRCGFKTVTPLLGKTSAEVFPAQLGSGYTEQDLRVLQQGALIQDQLEMHLYSGRETGWCLTQKLALYDVQGKIIGM
AGISHDLQEAKANHPAYQRLAAIDVYIRQHYARPIALEELTALTALSVAQIERYCKRIFHLTPRQMIHKVRLEKATELLA
SDLPITDIALQCGYTDHSAFSRQFKAMTGSTPRDFRISITS

Specific function: Activates expression of the rhaBAD and rhaT operons [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 HTH araC/xylS-type DNA-binding domains [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060 [H]

Pfam domain/function: PF02311 AraC_binding; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 31565; Mature: 31565

Theoretical pI: Translated: 7.93; Mature: 7.93

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLAQDHQLVTASRPVIEEPEQDIFAVEQLSRWCDGLAQQRPNTLHDLLNSLALIAPLLN
CCCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
AIPNVVFFIKDLQARYLLANLTLAKRCGFKTVTPLLGKTSAEVFPAQLGSGYTEQDLRVL
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCHHHHHHHHCCCCCHHHHHHH
QQGALIQDQLEMHLYSGRETGWCLTQKLALYDVQGKIIGMAGISHDLQEAKANHPAYQRL
HHCCHHHHHHHHHHHCCCCCCHHHHHHHHHEECCCCEEEECCCHHHHHHHHCCCHHHHHH
AAIDVYIRQHYARPIALEELTALTALSVAQIERYCKRIFHLTPRQMIHKVRLEKATELLA
HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
SDLPITDIALQCGYTDHSAFSRQFKAMTGSTPRDFRISITS
CCCCHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCEEEEECC
>Mature Secondary Structure
MRLAQDHQLVTASRPVIEEPEQDIFAVEQLSRWCDGLAQQRPNTLHDLLNSLALIAPLLN
CCCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
AIPNVVFFIKDLQARYLLANLTLAKRCGFKTVTPLLGKTSAEVFPAQLGSGYTEQDLRVL
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCHHHHHHHHCCCCCHHHHHHH
QQGALIQDQLEMHLYSGRETGWCLTQKLALYDVQGKIIGMAGISHDLQEAKANHPAYQRL
HHCCHHHHHHHHHHHCCCCCCHHHHHHHHHEECCCCEEEECCCHHHHHHHHCCCHHHHHH
AAIDVYIRQHYARPIALEELTALTALSVAQIERYCKRIFHLTPRQMIHKVRLEKATELLA
HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
SDLPITDIALQCGYTDHSAFSRQFKAMTGSTPRDFRISITS
CCCCHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA