| Definition | Serratia proteamaculans 568 chromosome, complete genome. |
|---|---|
| Accession | NC_009832 |
| Length | 5,448,853 |
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The map label for this gene is uup [H]
Identifier: 157369987
GI number: 157369987
Start: 1922186
End: 1924090
Strand: Direct
Name: uup [H]
Synonym: Spro_1744
Alternate gene names: 157369987
Gene position: 1922186-1924090 (Clockwise)
Preceding gene: 157369986
Following gene: 157369988
Centisome position: 35.28
GC content: 55.64
Gene sequence:
>1905_bases ATGTCGTTAATTAGCATGTCCGGTGCCTGGCTGTCCTTCAGCGATGCACCACTTTTAGACAACACCGAAATTCATATTGA AGACAACGAACGCGTTTGTCTGGTTGGGCGCAATGGCGCCGGTAAATCCACGCTGTTGAAGATCCTCGGCAAAGAAATTC CATTGGATGATGGCCGGGTGATTTACGAGCAGGATCTTATTGTGGCGCGCCTGCAACAGGATCCCCCGCGCAATATCGGC GGTACGGTGTTTGATTTCGTGGCCGAAGGCGTCGCCGAGCAGGCAGAACACCTGAAAGCCTACCACGCGATTTCGCACCT GGTGGAAACCGACCCAAGCGAAAGAAACCTGACGCGCATGGCGCAGATTATGGAGATCCTCGATCATCAGGGCCTGTGGC AGCTCGATAGCCGCATCAGCGAAGTGCTGCTGCAGTTGGGCCTGAATGGGGATGCGGAACTTTCCTCGCTCTCCGGCGGC TGGCTGCGTAAAGCGGCACTGGGCCGAGCGCTGGTAAGTTCTCCGCGCGTACTGTTGCTCGACGAACCGACCAACCACCT GGATATTTCAACCATCGATTGGCTGGAAGGCTTCCTGAAAGAGTTCCAGGGCAGCATCGTGTTTATTTCCCACGACCGTT CCTTTATCCGTAATATGGCGACGCGCATTGTCGATCTCGATCGCGGCAAGCTGGTGTCCTGGCCGGGCAACTACGATTTA TACCTGCTGAGCAAAGAAGAAGCGCTGCGGGTGGAAGAGCTGCAAAATGCTGAATTTGACCGCAAGCTGGCGCAGGAAGA AGTGTGGATCCGTCAGGGCATCAAGGCGCGTCGTACCCGTAACGAAGGCCGCGTTCGTGCGCTGAAGGCGTTGCGTAACG AGCGTTCAGAACGCCGAGAAGTGATGGGCACCGCCAAAATGCAGGTGGAAGAAGCGGTACGCTCCGGCAAGATCGTGTTT GAGATGGAAGACGTTAACTATCAGGTTGGCGGCAAAGTGTTGGTACGTAATTTCTCCGCCCAGGTGCAGCGTGGCGACAA AATTGCGTTGGTTGGTCCGAACGGTTGCGGCAAGACTACGCTGCTGAAACTGATGCTCAGCCAGTTGAAAGCCGACAGCG GCCGTGTGCACTGCGGGACCAAGCTGGAAGTGGCCTACTTCGACCAGCACCGTGCGGATCTGGATCCGGAGCGCACGGTC ATGGACAACCTGGCGGAAGGTAAGCAGGAAGTATTGGTCAACGGCCGTTCACGCCACGTATTGGGTTATCTGCAGGACTT CCTGTTCCACCCTAAACGGGCGATGACGCCGGTGAAAGCCTTGTCGGGCGGTGAGCGTAACCGTCTGTTGCTGGCCAAAC TGTTCCTGAAGCCTAGTAACTTATTGATCCTCGATGAACCTACCAACGACCTGGATGTTGAAACGCTGGAGTTGCTGGAA GAGCTGATCGACGGCTACCAGGGCACCGTGATGTTGGTCAGCCACGATCGTCAGTTCGTTGATAACTCGGTGACCGAATG CTGGATCTTTGAAGGCAACGGTGAGATCAGCACCTTCGTTGGCGGTTATTACGACGCGCATCATCAACGCGCGACGGCTA AACCGATCCGCCAGGTTACGGCTGAACAGAACAAGCCCGTAGCAGAAAAAAAGGCTGAACAGCCAAAGAAAACAGCGGCT AAACTGAGCTATAACCTGCTACGTGAGCTGGAGCAGTTGCCGCAACGCCTTGAACAACTGGAAGCGGAAATTACTGCGCT GCAGGCACAAATGAGCGATGCTGATTTCTTCACGCGTCCTCACAGCGAAACGCAACAGGTGCTGACGGCGCTGGCTACGG CCGAAGGGGCACTGGAAGAGGCGTTCGCCCGTTGGGAAGAGTTGGAAGCGATGAAAAACGGCTAA
Upstream 100 bases:
>100_bases AAGAAATTACCGCCCAGACGCAGTCGCAGGACTTTGCCCGTAACCGTCAAATTCATAACTGCTGGCTGCTTACCCATGCC GGCGAAGGAAAATAATTACT
Downstream 100 bases:
>100_bases CCGTTGAGAATACCGCCCGCGCGCTGCTGCGGGCGGTATTGCCGTACCGGTGAGCAACGTTGTTAAGGAGGAATATGGTG TGTTCCCACGAGAATCACGA
Product: ABC transporter ATPase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 634; Mature: 633
Protein sequence:
>634_residues MSLISMSGAWLSFSDAPLLDNTEIHIEDNERVCLVGRNGAGKSTLLKILGKEIPLDDGRVIYEQDLIVARLQQDPPRNIG GTVFDFVAEGVAEQAEHLKAYHAISHLVETDPSERNLTRMAQIMEILDHQGLWQLDSRISEVLLQLGLNGDAELSSLSGG WLRKAALGRALVSSPRVLLLDEPTNHLDISTIDWLEGFLKEFQGSIVFISHDRSFIRNMATRIVDLDRGKLVSWPGNYDL YLLSKEEALRVEELQNAEFDRKLAQEEVWIRQGIKARRTRNEGRVRALKALRNERSERREVMGTAKMQVEEAVRSGKIVF EMEDVNYQVGGKVLVRNFSAQVQRGDKIALVGPNGCGKTTLLKLMLSQLKADSGRVHCGTKLEVAYFDQHRADLDPERTV MDNLAEGKQEVLVNGRSRHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLAKLFLKPSNLLILDEPTNDLDVETLELLE ELIDGYQGTVMLVSHDRQFVDNSVTECWIFEGNGEISTFVGGYYDAHHQRATAKPIRQVTAEQNKPVAEKKAEQPKKTAA KLSYNLLRELEQLPQRLEQLEAEITALQAQMSDADFFTRPHSETQQVLTALATAEGALEEAFARWEELEAMKNG
Sequences:
>Translated_634_residues MSLISMSGAWLSFSDAPLLDNTEIHIEDNERVCLVGRNGAGKSTLLKILGKEIPLDDGRVIYEQDLIVARLQQDPPRNIG GTVFDFVAEGVAEQAEHLKAYHAISHLVETDPSERNLTRMAQIMEILDHQGLWQLDSRISEVLLQLGLNGDAELSSLSGG WLRKAALGRALVSSPRVLLLDEPTNHLDISTIDWLEGFLKEFQGSIVFISHDRSFIRNMATRIVDLDRGKLVSWPGNYDL YLLSKEEALRVEELQNAEFDRKLAQEEVWIRQGIKARRTRNEGRVRALKALRNERSERREVMGTAKMQVEEAVRSGKIVF EMEDVNYQVGGKVLVRNFSAQVQRGDKIALVGPNGCGKTTLLKLMLSQLKADSGRVHCGTKLEVAYFDQHRADLDPERTV MDNLAEGKQEVLVNGRSRHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLAKLFLKPSNLLILDEPTNDLDVETLELLE ELIDGYQGTVMLVSHDRQFVDNSVTECWIFEGNGEISTFVGGYYDAHHQRATAKPIRQVTAEQNKPVAEKKAEQPKKTAA KLSYNLLRELEQLPQRLEQLEAEITALQAQMSDADFFTRPHSETQQVLTALATAEGALEEAFARWEELEAMKNG >Mature_633_residues SLISMSGAWLSFSDAPLLDNTEIHIEDNERVCLVGRNGAGKSTLLKILGKEIPLDDGRVIYEQDLIVARLQQDPPRNIGG TVFDFVAEGVAEQAEHLKAYHAISHLVETDPSERNLTRMAQIMEILDHQGLWQLDSRISEVLLQLGLNGDAELSSLSGGW LRKAALGRALVSSPRVLLLDEPTNHLDISTIDWLEGFLKEFQGSIVFISHDRSFIRNMATRIVDLDRGKLVSWPGNYDLY LLSKEEALRVEELQNAEFDRKLAQEEVWIRQGIKARRTRNEGRVRALKALRNERSERREVMGTAKMQVEEAVRSGKIVFE MEDVNYQVGGKVLVRNFSAQVQRGDKIALVGPNGCGKTTLLKLMLSQLKADSGRVHCGTKLEVAYFDQHRADLDPERTVM DNLAEGKQEVLVNGRSRHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLAKLFLKPSNLLILDEPTNDLDVETLELLEE LIDGYQGTVMLVSHDRQFVDNSVTECWIFEGNGEISTFVGGYYDAHHQRATAKPIRQVTAEQNKPVAEKKAEQPKKTAAK LSYNLLRELEQLPQRLEQLEAEITALQAQMSDADFFTRPHSETQQVLTALATAEGALEEAFARWEELEAMKNG
Specific function: Unknown
COG id: COG0488
COG function: function code R; ATPase components of ABC transporters with duplicated ATPase domains
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 2 ABC transporter domains [H]
Homologues:
Organism=Homo sapiens, GI148612853, Length=527, Percent_Identity=30.9297912713473, Blast_Score=209, Evalue=9e-54, Organism=Homo sapiens, GI27881506, Length=518, Percent_Identity=30.5019305019305, Blast_Score=196, Evalue=7e-50, Organism=Homo sapiens, GI10947137, Length=518, Percent_Identity=30.5019305019305, Blast_Score=196, Evalue=7e-50, Organism=Homo sapiens, GI10947135, Length=546, Percent_Identity=28.021978021978, Blast_Score=169, Evalue=5e-42, Organism=Homo sapiens, GI69354671, Length=546, Percent_Identity=28.021978021978, Blast_Score=169, Evalue=7e-42, Organism=Homo sapiens, GI42741659, Length=218, Percent_Identity=25.2293577981651, Blast_Score=67, Evalue=5e-11, Organism=Escherichia coli, GI1787182, Length=634, Percent_Identity=78.7066246056782, Blast_Score=989, Evalue=0.0, Organism=Escherichia coli, GI2367384, Length=520, Percent_Identity=33.2692307692308, Blast_Score=286, Evalue=2e-78, Organism=Escherichia coli, GI1787041, Length=534, Percent_Identity=32.7715355805243, Blast_Score=253, Evalue=3e-68, Organism=Escherichia coli, GI1789751, Length=638, Percent_Identity=28.0564263322884, Blast_Score=238, Evalue=1e-63, Organism=Escherichia coli, GI1788506, Length=536, Percent_Identity=25.7462686567164, Blast_Score=111, Evalue=2e-25, Organism=Escherichia coli, GI1788165, Length=191, Percent_Identity=31.413612565445, Blast_Score=78, Evalue=2e-15, Organism=Escherichia coli, GI1787712, Length=245, Percent_Identity=27.3469387755102, Blast_Score=72, Evalue=1e-13, Organism=Escherichia coli, GI1789891, Length=249, Percent_Identity=26.1044176706827, Blast_Score=72, Evalue=1e-13, Organism=Escherichia coli, GI1790467, Length=228, Percent_Identity=28.5087719298246, Blast_Score=70, Evalue=3e-13, Organism=Escherichia coli, GI1788225, Length=229, Percent_Identity=26.2008733624454, Blast_Score=69, Evalue=8e-13, Organism=Escherichia coli, GI1786319, Length=157, Percent_Identity=33.7579617834395, Blast_Score=66, Evalue=7e-12, Organism=Escherichia coli, GI1787105, Length=224, Percent_Identity=28.5714285714286, Blast_Score=64, Evalue=3e-11, Organism=Escherichia coli, GI87081791, Length=204, Percent_Identity=29.4117647058824, Blast_Score=63, Evalue=6e-11, Organism=Caenorhabditis elegans, GI17559834, Length=541, Percent_Identity=28.2809611829945, Blast_Score=209, Evalue=3e-54, Organism=Caenorhabditis elegans, GI17555318, Length=521, Percent_Identity=28.2149712092131, Blast_Score=195, Evalue=5e-50, Organism=Caenorhabditis elegans, GI17553372, Length=553, Percent_Identity=31.1030741410488, Blast_Score=186, Evalue=4e-47, Organism=Saccharomyces cerevisiae, GI6321121, Length=534, Percent_Identity=30.1498127340824, Blast_Score=203, Evalue=6e-53, Organism=Saccharomyces cerevisiae, GI6320874, Length=527, Percent_Identity=29.4117647058824, Blast_Score=202, Evalue=1e-52, Organism=Saccharomyces cerevisiae, GI6323278, Length=383, Percent_Identity=25.3263707571802, Blast_Score=122, Evalue=2e-28, Organism=Saccharomyces cerevisiae, GI6325030, Length=388, Percent_Identity=26.0309278350515, Blast_Score=114, Evalue=4e-26, Organism=Saccharomyces cerevisiae, GI6324314, Length=385, Percent_Identity=25.4545454545455, Blast_Score=112, Evalue=3e-25, Organism=Drosophila melanogaster, GI24666836, Length=532, Percent_Identity=30.6390977443609, Blast_Score=211, Evalue=1e-54, Organism=Drosophila melanogaster, GI24642252, Length=539, Percent_Identity=28.2003710575139, Blast_Score=197, Evalue=2e-50, Organism=Drosophila melanogaster, GI18859989, Length=539, Percent_Identity=28.2003710575139, Blast_Score=197, Evalue=2e-50, Organism=Drosophila melanogaster, GI24641342, Length=547, Percent_Identity=28.7020109689214, Blast_Score=196, Evalue=4e-50, Organism=Drosophila melanogaster, GI116007184, Length=175, Percent_Identity=29.7142857142857, Blast_Score=74, Evalue=2e-13, Organism=Drosophila melanogaster, GI221500365, Length=177, Percent_Identity=30.5084745762712, Blast_Score=74, Evalue=2e-13, Organism=Drosophila melanogaster, GI281363262, Length=217, Percent_Identity=24.4239631336406, Blast_Score=70, Evalue=5e-12, Organism=Drosophila melanogaster, GI24653245, Length=217, Percent_Identity=24.4239631336406, Blast_Score=69, Evalue=7e-12, Organism=Drosophila melanogaster, GI17136662, Length=197, Percent_Identity=24.8730964467005, Blast_Score=66, Evalue=6e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR003593 [H]
Pfam domain/function: PF00005 ABC_tran [H]
EC number: NA
Molecular weight: Translated: 71323; Mature: 71192
Theoretical pI: Translated: 5.30; Mature: 5.30
Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSLISMSGAWLSFSDAPLLDNTEIHIEDNERVCLVGRNGAGKSTLLKILGKEIPLDDGRV CCEEECCCCEEECCCCCCCCCCEEEEECCCEEEEEECCCCCHHHHHHHHHCCCCCCCCCE IYEQDLIVARLQQDPPRNIGGTVFDFVAEGVAEQAEHLKAYHAISHLVETDPSERNLTRM EEECCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH AQIMEILDHQGLWQLDSRISEVLLQLGLNGDAELSSLSGGWLRKAALGRALVSSPRVLLL HHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCHHHCCCHHHHHHHHHHHHHCCCCEEEE DEPTNHLDISTIDWLEGFLKEFQGSIVFISHDRSFIRNMATRIVDLDRGKLVSWPGNYDL ECCCCCCCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHEECCCCCEEECCCCCEE YLLSKEEALRVEELQNAEFDRKLAQEEVWIRQGIKARRTRNEGRVRALKALRNERSERRE EEECCHHHHHHHHHHCCHHHHHHHHHHHHHHHCHHHHHCCCCHHHHHHHHHHHHHHHHHH VMGTAKMQVEEAVRSGKIVFEMEDVNYQVGGKVLVRNFSAQVQRGDKIALVGPNGCGKTT HHHHHHHHHHHHHHCCCEEEEEECCCEECCCEEEEEHHHHHHCCCCEEEEECCCCCCHHH LLKLMLSQLKADSGRVHCGTKLEVAYFDQHRADLDPERTVMDNLAEGKQEVLVNGRSRHV HHHHHHHHHCCCCCCEECCCEEEEEEECCCCCCCCHHHHHHHHHHCCCHHHHCCCCCHHH LGYLQDFLFHPKRAMTPVKALSGGERNRLLLAKLFLKPSNLLILDEPTNDLDVETLELLE HHHHHHHHHCCHHHCCHHHHHCCCCCCCEEEEHHHCCCCCEEEEECCCCCCCHHHHHHHH ELIDGYQGTVMLVSHDRQFVDNSVTECWIFEGNGEISTFVGGYYDAHHQRATAKPIRQVT HHHCCCCCEEEEEECCHHHHCCCCCEEEEEECCCCEEEHHCCHHHHHHHHHHHHHHHHHH AEQNKPVAEKKAEQPKKTAAKLSYNLLRELEQLPQRLEQLEAEITALQAQMSDADFFTRP HHCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCC HSETQQVLTALATAEGALEEAFARWEELEAMKNG CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure SLISMSGAWLSFSDAPLLDNTEIHIEDNERVCLVGRNGAGKSTLLKILGKEIPLDDGRV CEEECCCCEEECCCCCCCCCCEEEEECCCEEEEEECCCCCHHHHHHHHHCCCCCCCCCE IYEQDLIVARLQQDPPRNIGGTVFDFVAEGVAEQAEHLKAYHAISHLVETDPSERNLTRM EEECCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH AQIMEILDHQGLWQLDSRISEVLLQLGLNGDAELSSLSGGWLRKAALGRALVSSPRVLLL HHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCHHHCCCHHHHHHHHHHHHHCCCCEEEE DEPTNHLDISTIDWLEGFLKEFQGSIVFISHDRSFIRNMATRIVDLDRGKLVSWPGNYDL ECCCCCCCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHEECCCCCEEECCCCCEE YLLSKEEALRVEELQNAEFDRKLAQEEVWIRQGIKARRTRNEGRVRALKALRNERSERRE EEECCHHHHHHHHHHCCHHHHHHHHHHHHHHHCHHHHHCCCCHHHHHHHHHHHHHHHHHH VMGTAKMQVEEAVRSGKIVFEMEDVNYQVGGKVLVRNFSAQVQRGDKIALVGPNGCGKTT HHHHHHHHHHHHHHCCCEEEEEECCCEECCCEEEEEHHHHHHCCCCEEEEECCCCCCHHH LLKLMLSQLKADSGRVHCGTKLEVAYFDQHRADLDPERTVMDNLAEGKQEVLVNGRSRHV HHHHHHHHHCCCCCCEECCCEEEEEEECCCCCCCCHHHHHHHHHHCCCHHHHCCCCCHHH LGYLQDFLFHPKRAMTPVKALSGGERNRLLLAKLFLKPSNLLILDEPTNDLDVETLELLE HHHHHHHHHCCHHHCCHHHHHCCCCCCCEEEEHHHCCCCCEEEEECCCCCCCHHHHHHHH ELIDGYQGTVMLVSHDRQFVDNSVTECWIFEGNGEISTFVGGYYDAHHQRATAKPIRQVT HHHCCCCCEEEEEECCHHHHCCCCCEEEEEECCCCEEEHHCCHHHHHHHHHHHHHHHHHH AEQNKPVAEKKAEQPKKTAAKLSYNLLRELEQLPQRLEQLEAEITALQAQMSDADFFTRP HHCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCC HSETQQVLTALATAEGALEEAFARWEELEAMKNG CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: Endonuclease; Excision [C]
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8905232; 9278503; 9139905; 7751275 [H]