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The map label for this gene is ydcN [H]

Identifier: 157369697

GI number: 157369697

Start: 1586966

End: 1587535

Strand: Direct

Name: ydcN [H]

Synonym: Spro_1454

Alternate gene names: 157369697

Gene position: 1586966-1587535 (Clockwise)

Preceding gene: 157369696

Following gene: 157369698

Centisome position: 29.12

GC content: 59.12

Gene sequence:

>570_bases
ATGGATAACGGATTGGAAAGTGCCGATCTCAGACTGGCGCAGCGACTGTCTGATTTACGCCAGCAGCAGGGCTGGTCGCT
GGAGGAATTGGCTCAGCAAACCGGCATCAGCCGGGCGACGTTGTCGCGGGTCGAACGCGCTGAAACCAGCCCGACTGCTT
CATTGTTAAACAAACTGTGCTCGGCCTATGGGTTGACCATGTCACGACTGCTGAGCGAGGTCGAGGACGAGCCGCCGGAG
TTGCTGCATCGTGAGCAGCAGACGGTATGGGTGGACCGCGCAAGCGGTTTTCATCGCTGTTCGGTATCACCGCCTGCTGC
CTTGTATAAGGCCGAGTTTATTGAATGCACACTCGAGGCCGGGGCGGTGATTGCCTATGACGCACCCTCGATACATGCGC
TTGAGCACCATTTGTGGCTGCTGGCAGGGCGGCTCGAACTGACGCTGGAGGGGCGCACCTTCCAGCTTGAGCCGGGTGAC
TGCCTGCGTTATCGGCTGTTCGGCGCTTCAAAATTTCATGCCTCCGGCCCTGAGCCGGCCCACTACACCCTTGTTATCAG
CAGGCCTTAA

Upstream 100 bases:

>100_bases
CTTTTCGCCAAGTTGTAGTGCCAGTTAAAAATCTGGTTGACGAATCCCGTATTTGAGATTATTTCTCTTATATGGGATTT
TTTGTATCAGAGACTTAATC

Downstream 100 bases:

>100_bases
TCATGATTGAGATACAGCAACTGAATGCCGAAGCGGCACAAAACGCGATCCCGGAACTGGCCGAAATGCTGCAAGCCAGC
GTCTCCCAGGGGGCGAGCAT

Product: XRE family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 189; Mature: 189

Protein sequence:

>189_residues
MDNGLESADLRLAQRLSDLRQQQGWSLEELAQQTGISRATLSRVERAETSPTASLLNKLCSAYGLTMSRLLSEVEDEPPE
LLHREQQTVWVDRASGFHRCSVSPPAALYKAEFIECTLEAGAVIAYDAPSIHALEHHLWLLAGRLELTLEGRTFQLEPGD
CLRYRLFGASKFHASGPEPAHYTLVISRP

Sequences:

>Translated_189_residues
MDNGLESADLRLAQRLSDLRQQQGWSLEELAQQTGISRATLSRVERAETSPTASLLNKLCSAYGLTMSRLLSEVEDEPPE
LLHREQQTVWVDRASGFHRCSVSPPAALYKAEFIECTLEAGAVIAYDAPSIHALEHHLWLLAGRLELTLEGRTFQLEPGD
CLRYRLFGASKFHASGPEPAHYTLVISRP
>Mature_189_residues
MDNGLESADLRLAQRLSDLRQQQGWSLEELAQQTGISRATLSRVERAETSPTASLLNKLCSAYGLTMSRLLSEVEDEPPE
LLHREQQTVWVDRASGFHRCSVSPPAALYKAEFIECTLEAGAVIAYDAPSIHALEHHLWLLAGRLELTLEGRTFQLEPGD
CLRYRLFGASKFHASGPEPAHYTLVISRP

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH cro/C1-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787704, Length=178, Percent_Identity=27.5280898876405, Blast_Score=75, Evalue=3e-15,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013096
- InterPro:   IPR011051
- InterPro:   IPR001387
- InterPro:   IPR010982
- InterPro:   IPR014710 [H]

Pfam domain/function: PF07883 Cupin_2; PF01381 HTH_3 [H]

EC number: NA

Molecular weight: Translated: 21055; Mature: 21055

Theoretical pI: Translated: 5.57; Mature: 5.57

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDNGLESADLRLAQRLSDLRQQQGWSLEELAQQTGISRATLSRVERAETSPTASLLNKLC
CCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHH
SAYGLTMSRLLSEVEDEPPELLHREQQTVWVDRASGFHRCSVSPPAALYKAEFIECTLEA
HHHHHHHHHHHHHHCCCCHHHHHCCHHEEEEECCCCCEECCCCCCHHHHHHHHHHEECCC
GAVIAYDAPSIHALEHHLWLLAGRLELTLEGRTFQLEPGDCLRYRLFGASKFHASGPEPA
CEEEEECCCCHHHHHHHHHHHCCEEEEEECCCEEEECCCCEEEEEEECCCCCCCCCCCCC
HYTLVISRP
EEEEEEECC
>Mature Secondary Structure
MDNGLESADLRLAQRLSDLRQQQGWSLEELAQQTGISRATLSRVERAETSPTASLLNKLC
CCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHH
SAYGLTMSRLLSEVEDEPPELLHREQQTVWVDRASGFHRCSVSPPAALYKAEFIECTLEA
HHHHHHHHHHHHHHCCCCHHHHHCCHHEEEEECCCCCEECCCCCCHHHHHHHHHHEECCC
GAVIAYDAPSIHALEHHLWLLAGRLELTLEGRTFQLEPGDCLRYRLFGASKFHASGPEPA
CEEEEECCCCHHHHHHHHHHHCCEEEEEECCCEEEECCCCEEEEEEECCCCCCCCCCCCC
HYTLVISRP
EEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]