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The map label for this gene is yhjC [H]

Identifier: 157369623

GI number: 157369623

Start: 1508505

End: 1509398

Strand: Reverse

Name: yhjC [H]

Synonym: Spro_1380

Alternate gene names: 157369623

Gene position: 1509398-1508505 (Counterclockwise)

Preceding gene: 157369624

Following gene: 157369622

Centisome position: 27.7

GC content: 60.4

Gene sequence:

>894_bases
ATGGATCATCATTTACTCGCTATCCGGGTGTTTAACCGCGTGGTGGAAACCGGCGGTTTCACCCGCGCCGCAGATTCACT
GCGGATGCCCAAGGCCACCGTCACCAAGCTTATCCAGAGTTTGGAAGATCATCTGCAAACCAAGCTGTTTCAGCGCACCA
CCCGCAGCGTGTCGGTCACCGCCGAGGGCGAATGCTATTACCAGCGGACGGTAAAGTGGCTGGCGGAACTGGAACAGATG
GAAGGCAGCATGACCGAGTCGCAGAGTGCGCCGCAGGGCGTGCTGCGGATTGATGTCGGCGGATCCACCGCACGCCAACT
GCTGCTGCCGGCGCTGCCGGACTTTATTGCGCGCTATCCGCAAATCCAAATTGATCTGGGCGTAGGCGACCGACTCATCG
ACCTGATTAACGACAGCGCCGACTGCGTGATCCGCAGCGGCCCGCTGGCCGATTCCAGCCTGATTGCCCGCCGGCTGTTC
GAACTTGAATGGGTCACCTGCGCCACCCCAGCCTATCTGGCGCGCCACGGCACGCCGCAACACCCGTGCGATCTGGAACA
GGGTTATCCGTTGGCGCACTACCGCCATGCGCTGAACGATCGCATCCAGCCGCTGCACTTTGTCGATCGGGGCAAAGAGA
TTGATATCCAGCACCGCTACCACGTCAGCGTCAACGAGAGCAATGCGCTGCTGGCGGCGGCATTGGCCGGGCTGGGCATG
ATCCAGACCTTCCGCTTTATGGCGCAGCCGCATCTGGACAACGGCGAACTGGTCAGCCTGCTGCACGACTGGCAACCGCC
CTCGGAACAGATGTACGTGGTCTATCCCTCCAACCGCCATCTTAGCGCCAAGATGCGCGTGTTTATCGATTGGGCGATCG
AGACCTTCAAATAA

Upstream 100 bases:

>100_bases
GACCTTGCGTTCCGGCATGATTGGCGTTAAACAGTCATAACCATTATTTATCTACAGAAACACACCCCGGCCTCTGCCGG
GGTTTTGCACTGAGAGCGCT

Downstream 100 bases:

>100_bases
GCGAAAACTGCCGCTATAGTTGGCTGTCATTGGGCAAAAAACGAACCGAATCATGCATATTGAACAACTATCTGCGTATC
GCCAGCGCATTGATGAACTG

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 297; Mature: 297

Protein sequence:

>297_residues
MDHHLLAIRVFNRVVETGGFTRAADSLRMPKATVTKLIQSLEDHLQTKLFQRTTRSVSVTAEGECYYQRTVKWLAELEQM
EGSMTESQSAPQGVLRIDVGGSTARQLLLPALPDFIARYPQIQIDLGVGDRLIDLINDSADCVIRSGPLADSSLIARRLF
ELEWVTCATPAYLARHGTPQHPCDLEQGYPLAHYRHALNDRIQPLHFVDRGKEIDIQHRYHVSVNESNALLAAALAGLGM
IQTFRFMAQPHLDNGELVSLLHDWQPPSEQMYVVYPSNRHLSAKMRVFIDWAIETFK

Sequences:

>Translated_297_residues
MDHHLLAIRVFNRVVETGGFTRAADSLRMPKATVTKLIQSLEDHLQTKLFQRTTRSVSVTAEGECYYQRTVKWLAELEQM
EGSMTESQSAPQGVLRIDVGGSTARQLLLPALPDFIARYPQIQIDLGVGDRLIDLINDSADCVIRSGPLADSSLIARRLF
ELEWVTCATPAYLARHGTPQHPCDLEQGYPLAHYRHALNDRIQPLHFVDRGKEIDIQHRYHVSVNESNALLAAALAGLGM
IQTFRFMAQPHLDNGELVSLLHDWQPPSEQMYVVYPSNRHLSAKMRVFIDWAIETFK
>Mature_297_residues
MDHHLLAIRVFNRVVETGGFTRAADSLRMPKATVTKLIQSLEDHLQTKLFQRTTRSVSVTAEGECYYQRTVKWLAELEQM
EGSMTESQSAPQGVLRIDVGGSTARQLLLPALPDFIARYPQIQIDLGVGDRLIDLINDSADCVIRSGPLADSSLIARRLF
ELEWVTCATPAYLARHGTPQHPCDLEQGYPLAHYRHALNDRIQPLHFVDRGKEIDIQHRYHVSVNESNALLAAALAGLGM
IQTFRFMAQPHLDNGELVSLLHDWQPPSEQMYVVYPSNRHLSAKMRVFIDWAIETFK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693193, Length=293, Percent_Identity=37.8839590443686, Blast_Score=193, Evalue=1e-50,
Organism=Escherichia coli, GI1786401, Length=290, Percent_Identity=35.1724137931034, Blast_Score=160, Evalue=1e-40,
Organism=Escherichia coli, GI1789639, Length=296, Percent_Identity=31.7567567567568, Blast_Score=139, Evalue=3e-34,
Organism=Escherichia coli, GI1787128, Length=282, Percent_Identity=29.0780141843972, Blast_Score=137, Evalue=8e-34,
Organism=Escherichia coli, GI87081978, Length=292, Percent_Identity=32.1917808219178, Blast_Score=126, Evalue=2e-30,
Organism=Escherichia coli, GI1789440, Length=284, Percent_Identity=28.5211267605634, Blast_Score=123, Evalue=2e-29,
Organism=Escherichia coli, GI1787589, Length=283, Percent_Identity=25.7950530035336, Blast_Score=105, Evalue=4e-24,
Organism=Escherichia coli, GI1786448, Length=295, Percent_Identity=26.4406779661017, Blast_Score=89, Evalue=3e-19,
Organism=Escherichia coli, GI1789173, Length=290, Percent_Identity=27.9310344827586, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI1788706, Length=295, Percent_Identity=24.7457627118644, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI87082132, Length=297, Percent_Identity=25.9259259259259, Blast_Score=71, Evalue=1e-13,
Organism=Escherichia coli, GI1787601, Length=174, Percent_Identity=28.1609195402299, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI157672245, Length=119, Percent_Identity=33.6134453781513, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1786713, Length=283, Percent_Identity=28.6219081272085, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1788481, Length=293, Percent_Identity=25.2559726962457, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33582; Mature: 33582

Theoretical pI: Translated: 6.70; Mature: 6.70

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDHHLLAIRVFNRVVETGGFTRAADSLRMPKATVTKLIQSLEDHLQTKLFQRTTRSVSVT
CCCHHHHHHHHHHHHHCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCEEEEE
AEGECYYQRTVKWLAELEQMEGSMTESQSAPQGVLRIDVGGSTARQLLLPALPDFIARYP
ECCCHHHHHHHHHHHHHHHHCCCHHHCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHCC
QIQIDLGVGDRLIDLINDSADCVIRSGPLADSSLIARRLFELEWVTCATPAYLARHGTPQ
EEEEEECCCHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHEEEECCHHHHHHCCCCC
HPCDLEQGYPLAHYRHALNDRIQPLHFVDRGKEIDIQHRYHVSVNESNALLAAALAGLGM
CCCCCCCCCCHHHHHHHHHCCCCCCHHHCCCCEEEEEEEEEEEECCCCHHHHHHHHHHHH
IQTFRFMAQPHLDNGELVSLLHDWQPPSEQMYVVYPSNRHLSAKMRVFIDWAIETFK
HHHHHHHHCCCCCCCHHHHHHHCCCCCCCCEEEEECCCCCCCEEEEEEEEEEHHHCC
>Mature Secondary Structure
MDHHLLAIRVFNRVVETGGFTRAADSLRMPKATVTKLIQSLEDHLQTKLFQRTTRSVSVT
CCCHHHHHHHHHHHHHCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCEEEEE
AEGECYYQRTVKWLAELEQMEGSMTESQSAPQGVLRIDVGGSTARQLLLPALPDFIARYP
ECCCHHHHHHHHHHHHHHHHCCCHHHCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHCC
QIQIDLGVGDRLIDLINDSADCVIRSGPLADSSLIARRLFELEWVTCATPAYLARHGTPQ
EEEEEECCCHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHEEEECCHHHHHHCCCCC
HPCDLEQGYPLAHYRHALNDRIQPLHFVDRGKEIDIQHRYHVSVNESNALLAAALAGLGM
CCCCCCCCCCHHHHHHHHHCCCCCCHHHCCCCEEEEEEEEEEEECCCCHHHHHHHHHHHH
IQTFRFMAQPHLDNGELVSLLHDWQPPSEQMYVVYPSNRHLSAKMRVFIDWAIETFK
HHHHHHHHCCCCCCCHHHHHHHCCCCCCCCEEEEECCCCCCCEEEEEEEEEEHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503 [H]