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The map label for this gene is ybeY [C]

Identifier: 157369460

GI number: 157369460

Start: 1334211

End: 1334684

Strand: Reverse

Name: ybeY [C]

Synonym: Spro_1217

Alternate gene names: 157369460

Gene position: 1334684-1334211 (Counterclockwise)

Preceding gene: 157369461

Following gene: 157369459

Centisome position: 24.49

GC content: 56.54

Gene sequence:

>474_bases
ATGAGTCAGGTGATTTTGGATCTGCAGCTGGCCTGTGCAGATAACAGTGGCCTGCCGGATGAAGCCACCTTCCAGCGCTG
GCTGGAAGGCGTGCTGCCGCAGTTTCAGGAAGAAGCGGAGGTCACCATTCGCCTGGTGGATGAAGCCGAAAGCAATGAAC
TGAACCTGACTTATCGTGGCATGGACAAACCGACCAACGTGTTGTCATTCCCGTTCGAAGCTCCCCCGGGTATCGAGCTG
CCGCTGCTTGGCGATCTGATCATCTGCCGTCAGGTGGTTGAACGGGAAGCCGCTGAGCAAGACAAGGCGCTGGAGGCCCA
CTGGGCGCATATGGTTGTCCATGGCAGCCTTCATCTGCTAGGGTATGACCACATCGAAGACGATGAAGCCGAAGAAATGG
AGTCTTTGGAAACCGAAATCATGCACGGACTGGGTTACCCGGACCCGTACCTGGCGGAAAAAGACCCCCTCTGA

Upstream 100 bases:

>100_bases
TCGCCTATGAAGCCTGGGAAGCCGCCGAACAAAAGCGCAAAGACGCCATTGCCGAACAACGTAAACGCGAGGCGACCCTC
GCCTCCGAGCAGGAGACACC

Downstream 100 bases:

>100_bases
CGTCAGCTGATTTCCCCGCAGCCCCTGTATGGGGCTGTCGCTGACTCCCCTAACTCTGACATGAGTGATATTAACTAAAA
CGCCATGAGCGACGACCATT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 157; Mature: 156

Protein sequence:

>157_residues
MSQVILDLQLACADNSGLPDEATFQRWLEGVLPQFQEEAEVTIRLVDEAESNELNLTYRGMDKPTNVLSFPFEAPPGIEL
PLLGDLIICRQVVEREAAEQDKALEAHWAHMVVHGSLHLLGYDHIEDDEAEEMESLETEIMHGLGYPDPYLAEKDPL

Sequences:

>Translated_157_residues
MSQVILDLQLACADNSGLPDEATFQRWLEGVLPQFQEEAEVTIRLVDEAESNELNLTYRGMDKPTNVLSFPFEAPPGIEL
PLLGDLIICRQVVEREAAEQDKALEAHWAHMVVHGSLHLLGYDHIEDDEAEEMESLETEIMHGLGYPDPYLAEKDPL
>Mature_156_residues
SQVILDLQLACADNSGLPDEATFQRWLEGVLPQFQEEAEVTIRLVDEAESNELNLTYRGMDKPTNVLSFPFEAPPGIELP
LLGDLIICRQVVEREAAEQDKALEAHWAHMVVHGSLHLLGYDHIEDDEAEEMESLETEIMHGLGYPDPYLAEKDPL

Specific function: Involved in rRNA and/or ribosome maturation and assembly. Required for normal 5' and 3' processing of 16S, 23S and 5S rRNAs. May have metal-dependent hydrolase activity

COG id: COG0319

COG function: function code R; Predicted metal-dependent hydrolase

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rRNA maturation factor YbeY family

Homologues:

Organism=Escherichia coli, GI1786880, Length=155, Percent_Identity=81.2903225806452, Blast_Score=244, Evalue=2e-66,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RRMF_SERP5 (A8GB31)

Other databases:

- EMBL:   CP000826
- RefSeq:   YP_001477449.1
- ProteinModelPortal:   A8GB31
- SMR:   A8GB31
- STRING:   A8GB31
- GeneID:   5603389
- GenomeReviews:   CP000826_GR
- KEGG:   spe:Spro_1217
- eggNOG:   COG0319
- HOGENOM:   HBG734136
- OMA:   FTDPYKE
- BioCyc:   SPRO399741:SPRO_1217-MONOMER
- HAMAP:   MF_00009
- InterPro:   IPR023091
- InterPro:   IPR020549
- InterPro:   IPR002036
- Gene3D:   G3DSA:3.40.390.30
- TIGRFAMs:   TIGR00043

Pfam domain/function: PF02130 UPF0054

EC number: NA

Molecular weight: Translated: 17668; Mature: 17537

Theoretical pI: Translated: 3.89; Mature: 3.89

Prosite motif: PS01306 UPF0054

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQVILDLQLACADNSGLPDEATFQRWLEGVLPQFQEEAEVTIRLVDEAESNELNLTYRG
CCCEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCEEEEECC
MDKPTNVLSFPFEAPPGIELPLLGDLIICRQVVEREAAEQDKALEAHWAHMVVHGSLHLL
CCCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCEEEE
GYDHIEDDEAEEMESLETEIMHGLGYPDPYLAEKDPL
ECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
>Mature Secondary Structure 
SQVILDLQLACADNSGLPDEATFQRWLEGVLPQFQEEAEVTIRLVDEAESNELNLTYRG
CCEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCEEEEECC
MDKPTNVLSFPFEAPPGIELPLLGDLIICRQVVEREAAEQDKALEAHWAHMVVHGSLHLL
CCCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCEEEE
GYDHIEDDEAEEMESLETEIMHGLGYPDPYLAEKDPL
ECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA