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The map label for this gene is lptE

Identifier: 157369449

GI number: 157369449

Start: 1322112

End: 1322672

Strand: Reverse

Name: lptE

Synonym: Spro_1206

Alternate gene names: 157369449

Gene position: 1322672-1322112 (Counterclockwise)

Preceding gene: 157369450

Following gene: 157369448

Centisome position: 24.27

GC content: 56.86

Gene sequence:

>561_bases
GTGCGACAACGTATTCTGACGCTGTTGCTGGGGTTGGCGGTGCTGGTCACCGCCGGCTGCGGTTTTCACCTGCGTGGCAC
CACGCAGGTACCCTCGGAAATGAAAACGCTGATTCTGGACAGCTCAGACCCTTATGGTCCGCTGACCCGCGCCGTGCGTG
AGCAATTACGTCTGAGCGACGTGACCATTGTCAAAGATGCAAAACGCAAGGATCTCCCTTCCCTGCGCATCATTGGCGCC
ACCGAAAGCCAGGATACCGCCTCTATCTTCCAGGACGGTAAAACCGCTGAGTACCAGATGGTGCTGACGGTCCAGGCACA
GGTGTTGATCCCGGGTCACGATCTGTATCCGCTGAACGTGAAAGTATTCCGTTCGTTCTTCGATAACCCGCTGACCGCAC
TGGCAAAAGATTCCGAACAGGAAATTATTCGCCAAGAAATGCGTGAGCAGGCCGCCCAGCAACTGGTGCGTAAACTGCTG
ACGGTGCACGCGGCGGAAGAAGAAACGCAGCAGAAAGCCGCTGCGGCCGGTGAAAAAGCGGCCAGTCGCGTAGATCAATG
A

Upstream 100 bases:

>100_bases
ATCTGGTCGCTAAATATCTGGACGGGGTTACGGTTCGTAAAGTGATCTATGTTCCGGGCAAATTGCTTAACCTGGTTGTG
GGTTAACACAAGGAGGAATT

Downstream 100 bases:

>100_bases
TCCGTATTTACCCTGAACAACTTGCCGCGCAGCTCCGAGAGGGGCTGCGCGCTTGTTATTTATTGAGTGGCAATGAACCG
CTGCTGTTGCAGGAAAGTCA

Product: LPS-assembly lipoprotein RlpB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 186; Mature: 186

Protein sequence:

>186_residues
MRQRILTLLLGLAVLVTAGCGFHLRGTTQVPSEMKTLILDSSDPYGPLTRAVREQLRLSDVTIVKDAKRKDLPSLRIIGA
TESQDTASIFQDGKTAEYQMVLTVQAQVLIPGHDLYPLNVKVFRSFFDNPLTALAKDSEQEIIRQEMREQAAQQLVRKLL
TVHAAEEETQQKAAAAGEKAASRVDQ

Sequences:

>Translated_186_residues
MRQRILTLLLGLAVLVTAGCGFHLRGTTQVPSEMKTLILDSSDPYGPLTRAVREQLRLSDVTIVKDAKRKDLPSLRIIGA
TESQDTASIFQDGKTAEYQMVLTVQAQVLIPGHDLYPLNVKVFRSFFDNPLTALAKDSEQEIIRQEMREQAAQQLVRKLL
TVHAAEEETQQKAAAAGEKAASRVDQ
>Mature_186_residues
MRQRILTLLLGLAVLVTAGCGFHLRGTTQVPSEMKTLILDSSDPYGPLTRAVREQLRLSDVTIVKDAKRKDLPSLRIIGA
TESQDTASIFQDGKTAEYQMVLTVQAQVLIPGHDLYPLNVKVFRSFFDNPLTALAKDSEQEIIRQEMREQAAQQLVRKLL
TVHAAEEETQQKAAAAGEKAASRVDQ

Specific function: Together with lptD, is involved in the assembly of LPS in the outer leaflet of the outer membrane

COG id: COG2980

COG function: function code M; Rare lipoprotein B

Gene ontology:

Cell location: Cell outer membrane; Lipid-anchor

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the lptE lipoprotein family

Homologues:

Organism=Escherichia coli, GI1786860, Length=161, Percent_Identity=63.3540372670807, Blast_Score=219, Evalue=1e-58,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): LPTE_SERP5 (A8GB20)

Other databases:

- EMBL:   CP000826
- RefSeq:   YP_001477438.1
- ProteinModelPortal:   A8GB20
- SMR:   A8GB20
- STRING:   A8GB20
- GeneID:   5602924
- GenomeReviews:   CP000826_GR
- KEGG:   spe:Spro_1206
- eggNOG:   COG2980
- HOGENOM:   HBG644504
- OMA:   TAGCGFH
- ProtClustDB:   PRK10796
- BioCyc:   SPRO399741:SPRO_1206-MONOMER
- HAMAP:   MF_01186
- InterPro:   IPR007485

Pfam domain/function: PF04390 RplB

EC number: NA

Molecular weight: Translated: 20599; Mature: 20599

Theoretical pI: Translated: 7.61; Mature: 7.61

Prosite motif: PS51257 PROKAR_LIPOPROTEIN; PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRQRILTLLLGLAVLVTAGCGFHLRGTTQVPSEMKTLILDSSDPYGPLTRAVREQLRLSD
CHHHHHHHHHHHHHHHHCCCCEEECCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH
VTIVKDAKRKDLPSLRIIGATESQDTASIFQDGKTAEYQMVLTVQAQVLIPGHDLYPLNV
HHHCCCCHHCCCCCEEEEECCCCCHHHHHHHCCCCCCEEEEEEEEEEEEECCCCEECCHH
KVFRSFFDNPLTALAKDSEQEIIRQEMREQAAQQLVRKLLTVHAAEEETQQKAAAAGEKA
HHHHHHHCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ASRVDQ
HHHCCC
>Mature Secondary Structure
MRQRILTLLLGLAVLVTAGCGFHLRGTTQVPSEMKTLILDSSDPYGPLTRAVREQLRLSD
CHHHHHHHHHHHHHHHHCCCCEEECCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH
VTIVKDAKRKDLPSLRIIGATESQDTASIFQDGKTAEYQMVLTVQAQVLIPGHDLYPLNV
HHHCCCCHHCCCCCEEEEECCCCCHHHHHHHCCCCCCEEEEEEEEEEEEECCCCEECCHH
KVFRSFFDNPLTALAKDSEQEIIRQEMREQAAQQLVRKLLTVHAAEEETQQKAAAAGEKA
HHHHHHHCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ASRVDQ
HHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA