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The map label for this gene is rdgC

Identifier: 157369270

GI number: 157369270

Start: 1127367

End: 1128278

Strand: Reverse

Name: rdgC

Synonym: Spro_1027

Alternate gene names: 157369270

Gene position: 1128278-1127367 (Counterclockwise)

Preceding gene: 157369271

Following gene: 157369262

Centisome position: 20.71

GC content: 54.71

Gene sequence:

>912_bases
ATGCTGTGGTTTAAGAATTTGATGGTTTACCGTTTGAGCCGCGAAGTGGCGTTAAACGCGGATGAAATGGAAAAACAACT
CAGCGCTTTTGCTTTCACCCCGTGCGGCAGCCAGGACATGGCGAAAACCGGCTGGGTTTCTCCGATGGGTTCCCACAGCG
AGTCACTGACACACGCGGTTAACGGCCAGATCGTTATTTGCGCGCGCAAGGAAGAAAAAATCCTGCCGTCGCCGGTCATC
AAACAAGAGTTGCAGGCCAAGATTGAACGCCTGGAAGGTGAACAACACCGTAAGCTGAAGAAAACCGAGAAAGACGCGCT
GAAAGACGAAGTGCTGCACAGCCTGTTGCCACGCGCCTTTAGCCGCTTTAATCAGACTTTTATGTGGATCGACACGGTTA
ATGACCTGATTATGGTTGATGCCGCCAGCGCCAAACGCGCGGAAGACACTCTGGCGCTGCTGCGCAAAAGTCTGGGTTCA
CTGCCGGTAGTGCCGTTGACCATGGAAAGCCCGATCGAACTGACGCTGACCGAGTGGGTACGTTCCGGTGAGCTGCCGGC
CGGCTTTATCATTCAGGACGAAGCAGAGTTGAAGGCAATTCTGGAAGACGGCGGCGTGATCCGCTGCAAGAAACAGAACC
TGATCAGCGATGAGATTGCGGTACATATCGAAGCCGGCAAGCTGGTGACCAAGCTGGCGGTGGACTGGCAGGAGCGCATT
CAACTGGTGCTGGCAGACGACGGTTCGCTGAAGCGTTTGAAGTTCGCCGATACGCTGCGCGAACAGAACGACGATATCGA
TCGTGACGACTTTGCCCAGCGTTTTGACGCCGACTTTATCCTGATGACCAGCGAACTGGCTGCGTTAATCAAGAACACCA
TCGAAGCCCTGGGTGGCGAAGCTCAGCGCTAG

Upstream 100 bases:

>100_bases
CGGAGGGAATGAGGCGATTTTTCGCCCCTGATTCGTTATTATGCCGCCCTGCTTTTGATGAATAAGCGTGCCAGACGCAC
GCCCAGCCAGGGATAACATT

Downstream 100 bases:

>100_bases
CCTGCCTTAAAATACCAAGGGCTCTGCATGCAGAGCCCTTATTGTCATATTTCATGGCAGGAAAACCACTTACTTTCCCC
GCCCATAATATTTTCTGAAT

Product: recombination associated protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 303; Mature: 303

Protein sequence:

>303_residues
MLWFKNLMVYRLSREVALNADEMEKQLSAFAFTPCGSQDMAKTGWVSPMGSHSESLTHAVNGQIVICARKEEKILPSPVI
KQELQAKIERLEGEQHRKLKKTEKDALKDEVLHSLLPRAFSRFNQTFMWIDTVNDLIMVDAASAKRAEDTLALLRKSLGS
LPVVPLTMESPIELTLTEWVRSGELPAGFIIQDEAELKAILEDGGVIRCKKQNLISDEIAVHIEAGKLVTKLAVDWQERI
QLVLADDGSLKRLKFADTLREQNDDIDRDDFAQRFDADFILMTSELAALIKNTIEALGGEAQR

Sequences:

>Translated_303_residues
MLWFKNLMVYRLSREVALNADEMEKQLSAFAFTPCGSQDMAKTGWVSPMGSHSESLTHAVNGQIVICARKEEKILPSPVI
KQELQAKIERLEGEQHRKLKKTEKDALKDEVLHSLLPRAFSRFNQTFMWIDTVNDLIMVDAASAKRAEDTLALLRKSLGS
LPVVPLTMESPIELTLTEWVRSGELPAGFIIQDEAELKAILEDGGVIRCKKQNLISDEIAVHIEAGKLVTKLAVDWQERI
QLVLADDGSLKRLKFADTLREQNDDIDRDDFAQRFDADFILMTSELAALIKNTIEALGGEAQR
>Mature_303_residues
MLWFKNLMVYRLSREVALNADEMEKQLSAFAFTPCGSQDMAKTGWVSPMGSHSESLTHAVNGQIVICARKEEKILPSPVI
KQELQAKIERLEGEQHRKLKKTEKDALKDEVLHSLLPRAFSRFNQTFMWIDTVNDLIMVDAASAKRAEDTLALLRKSLGS
LPVVPLTMESPIELTLTEWVRSGELPAGFIIQDEAELKAILEDGGVIRCKKQNLISDEIAVHIEAGKLVTKLAVDWQERI
QLVLADDGSLKRLKFADTLREQNDDIDRDDFAQRFDADFILMTSELAALIKNTIEALGGEAQR

Specific function: May be involved in recombination

COG id: COG2974

COG function: function code L; DNA recombination-dependent growth factor C

Gene ontology:

Cell location: Cytoplasm, nucleoid

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rdgC family

Homologues:

Organism=Escherichia coli, GI1786592, Length=303, Percent_Identity=81.1881188118812, Blast_Score=511, Evalue=1e-146,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RDGC_SERP5 (A8GAJ1)

Other databases:

- EMBL:   CP000826
- RefSeq:   YP_001477259.1
- ProteinModelPortal:   A8GAJ1
- SMR:   A8GAJ1
- STRING:   A8GAJ1
- GeneID:   5606477
- GenomeReviews:   CP000826_GR
- KEGG:   spe:Spro_1027
- eggNOG:   COG2974
- HOGENOM:   HBG537402
- OMA:   PCSSQDI
- ProtClustDB:   PRK00321
- BioCyc:   SPRO399741:SPRO_1027-MONOMER
- GO:   GO:0005737
- GO:   GO:0009295
- HAMAP:   MF_00194
- InterPro:   IPR007476

Pfam domain/function: PF04381 RdgC

EC number: NA

Molecular weight: Translated: 34073; Mature: 34073

Theoretical pI: Translated: 4.95; Mature: 4.95

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLWFKNLMVYRLSREVALNADEMEKQLSAFAFTPCGSQDMAKTGWVSPMGSHSESLTHAV
CCHHHHHHHHHHHHHHHCCHHHHHHHHHHHEECCCCCCCHHHHCCCCCCCCCHHHHHHHC
NGQIVICARKEEKILPSPVIKQELQAKIERLEGEQHRKLKKTEKDALKDEVLHSLLPRAF
CCEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
SRFNQTFMWIDTVNDLIMVDAASAKRAEDTLALLRKSLGSLPVVPLTMESPIELTLTEWV
HHHCCEEEEEECCCCEEEEECCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEHHHHH
RSGELPAGFIIQDEAELKAILEDGGVIRCKKQNLISDEIAVHIEAGKLVTKLAVDWQERI
HCCCCCCCEEEECHHHHHHHHHCCCEEEEECCCCCCCCEEEEEECCHHHHHHHHCHHHHE
QLVLADDGSLKRLKFADTLREQNDDIDRDDFAQRFDADFILMTSELAALIKNTIEALGGE
EEEEECCCCCHHHHHHHHHHHCCCCCCHHHHHHHHCCCEEEHHHHHHHHHHHHHHHCCCC
AQR
CCC
>Mature Secondary Structure
MLWFKNLMVYRLSREVALNADEMEKQLSAFAFTPCGSQDMAKTGWVSPMGSHSESLTHAV
CCHHHHHHHHHHHHHHHCCHHHHHHHHHHHEECCCCCCCHHHHCCCCCCCCCHHHHHHHC
NGQIVICARKEEKILPSPVIKQELQAKIERLEGEQHRKLKKTEKDALKDEVLHSLLPRAF
CCEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
SRFNQTFMWIDTVNDLIMVDAASAKRAEDTLALLRKSLGSLPVVPLTMESPIELTLTEWV
HHHCCEEEEEECCCCEEEEECCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEHHHHH
RSGELPAGFIIQDEAELKAILEDGGVIRCKKQNLISDEIAVHIEAGKLVTKLAVDWQERI
HCCCCCCCEEEECHHHHHHHHHCCCEEEEECCCCCCCCEEEEEECCHHHHHHHHCHHHHE
QLVLADDGSLKRLKFADTLREQNDDIDRDDFAQRFDADFILMTSELAALIKNTIEALGGE
EEEEECCCCCHHHHHHHHHHHCCCCCCHHHHHHHHCCCEEEHHHHHHHHHHHHHHHCCCC
AQR
CCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA