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The map label for this gene is yeaM [H]

Identifier: 157369262

GI number: 157369262

Start: 1120146

End: 1120919

Strand: Reverse

Name: yeaM [H]

Synonym: Spro_1019

Alternate gene names: 157369262

Gene position: 1120919-1120146 (Counterclockwise)

Preceding gene: 157369270

Following gene: 157369257

Centisome position: 20.57

GC content: 58.14

Gene sequence:

>774_bases
ATGATCCTGCAAAGCGAACGACTGTGGCATGAAAAAAAGCACTTAACGCCCTGGCATCAACATACCCGCGGACAGCTCTA
TTTATTAACCCACGGCATGATTGCGCTGGAAACTCAGGAGCAACAATGGGCAATGACCGCCGGCAGTATCGGCTGGCTGC
CAGCGAACTGCGCGCACCAGGCATTGGCCTGTGGCAACGTCGCCGGCTGGAGCCTGTATCTGCCTGGATCCCTATGTGCA
GATCTGCCGAAACAACCTCATTTGAGCACGGCTTCCGGGTTGATTTTGGCGTTGGTGGAACGCCTTGCACAATTCGCAGG
CCAAAGGCTGAACGCGCCGCAACGGCGACTACTACAGGTATTGCTCGATGAGATGTGCGCGCAGGAAAGTACTCCGTTGC
AACTGCCTCTGCCGCAGGACGCACGACTGCTGAAAATCGCCCGTGCGCTACTCAATGAGCCGGCCAGCGAACGCAGCCAG
AGTGAATGGGCCGCCTGGACCGGGCTGAGCGTCCGTACCCTGAGCCGGCATTTCATCAGCGAAACCGGCGTGACTTTCGC
CCGCTGGCGCCAGCAGGCCCGGGTGCTCCGTTCGCTGGAGCCATTGTCACGCGGTGAAGCCATCAATCAGATTGCCGGCG
ACTGCGGTTATGACAATGTCAGCGCCTACATTGCCGCTTTCCGTCAGCGTTTTGGCACCACACCGGGATTGTATTTTGTT
CAGCGCGAGACTCATATTCGGGAGAAAAACGAGGCAGCCGTCAGGCGCAATTGA

Upstream 100 bases:

>100_bases
TTTTATCTCCAAAGTTAAACGTTGAGGAGATCATAGATCAGGCAGAGGATGGCATAATAACCGCAACTGGACATTCAATA
CGGTAAATCGGCCAATCAAG

Downstream 100 bases:

>100_bases
CGGTGCCCCAAGAGAGAGCTTATTTTACCGTTTCCAACTGCAGGGCGGAGAGGATCTGCTCAACCACCTGTTGCGGGCCA
CCGGTGCCGTCCATCACGTA

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 257; Mature: 257

Protein sequence:

>257_residues
MILQSERLWHEKKHLTPWHQHTRGQLYLLTHGMIALETQEQQWAMTAGSIGWLPANCAHQALACGNVAGWSLYLPGSLCA
DLPKQPHLSTASGLILALVERLAQFAGQRLNAPQRRLLQVLLDEMCAQESTPLQLPLPQDARLLKIARALLNEPASERSQ
SEWAAWTGLSVRTLSRHFISETGVTFARWRQQARVLRSLEPLSRGEAINQIAGDCGYDNVSAYIAAFRQRFGTTPGLYFV
QRETHIREKNEAAVRRN

Sequences:

>Translated_257_residues
MILQSERLWHEKKHLTPWHQHTRGQLYLLTHGMIALETQEQQWAMTAGSIGWLPANCAHQALACGNVAGWSLYLPGSLCA
DLPKQPHLSTASGLILALVERLAQFAGQRLNAPQRRLLQVLLDEMCAQESTPLQLPLPQDARLLKIARALLNEPASERSQ
SEWAAWTGLSVRTLSRHFISETGVTFARWRQQARVLRSLEPLSRGEAINQIAGDCGYDNVSAYIAAFRQRFGTTPGLYFV
QRETHIREKNEAAVRRN
>Mature_257_residues
MILQSERLWHEKKHLTPWHQHTRGQLYLLTHGMIALETQEQQWAMTAGSIGWLPANCAHQALACGNVAGWSLYLPGSLCA
DLPKQPHLSTASGLILALVERLAQFAGQRLNAPQRRLLQVLLDEMCAQESTPLQLPLPQDARLLKIARALLNEPASERSQ
SEWAAWTGLSVRTLSRHFISETGVTFARWRQQARVLRSLEPLSRGEAINQIAGDCGYDNVSAYIAAFRQRFGTTPGLYFV
QRETHIREKNEAAVRRN

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788091, Length=235, Percent_Identity=30.2127659574468, Blast_Score=111, Evalue=5e-26,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011051
- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018062
- InterPro:   IPR018060
- InterPro:   IPR014710 [H]

Pfam domain/function: PF02311 AraC_binding [H]

EC number: NA

Molecular weight: Translated: 28920; Mature: 28920

Theoretical pI: Translated: 9.31; Mature: 9.31

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MILQSERLWHEKKHLTPWHQHTRGQLYLLTHGMIALETQEQQWAMTAGSIGWLPANCAHQ
CCCCCHHHHHHHHCCCCHHHCCCCEEEEEECCEEEEECCHHHHHHHCCCCCCCCHHHHHH
ALACGNVAGWSLYLPGSLCADLPKQPHLSTASGLILALVERLAQFAGQRLNAPQRRLLQV
HHHCCCCCCCEEECCCHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
LLDEMCAQESTPLQLPLPQDARLLKIARALLNEPASERSQSEWAAWTGLSVRTLSRHFIS
HHHHHHCCCCCCEECCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHH
ETGVTFARWRQQARVLRSLEPLSRGEAINQIAGDCGYDNVSAYIAAFRQRFGTTPGLYFV
HCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCEEEE
QRETHIREKNEAAVRRN
ECHHHHHHHHHHHHCCC
>Mature Secondary Structure
MILQSERLWHEKKHLTPWHQHTRGQLYLLTHGMIALETQEQQWAMTAGSIGWLPANCAHQ
CCCCCHHHHHHHHCCCCHHHCCCCEEEEEECCEEEEECCHHHHHHHCCCCCCCCHHHHHH
ALACGNVAGWSLYLPGSLCADLPKQPHLSTASGLILALVERLAQFAGQRLNAPQRRLLQV
HHHCCCCCCCEEECCCHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
LLDEMCAQESTPLQLPLPQDARLLKIARALLNEPASERSQSEWAAWTGLSVRTLSRHFIS
HHHHHHCCCCCCEECCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHH
ETGVTFARWRQQARVLRSLEPLSRGEAINQIAGDCGYDNVSAYIAAFRQRFGTTPGLYFV
HCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCEEEE
QRETHIREKNEAAVRRN
ECHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]