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The map label for this gene is dgdR [H]

Identifier: 157369234

GI number: 157369234

Start: 1095181

End: 1096089

Strand: Direct

Name: dgdR [H]

Synonym: Spro_0991

Alternate gene names: 157369234

Gene position: 1095181-1096089 (Clockwise)

Preceding gene: 157369231

Following gene: 157369236

Centisome position: 20.1

GC content: 56.77

Gene sequence:

>909_bases
ATGGTGAGTAAATCCGATTTTTGTCATGAGGTGTCTATGAACCAGCGCTTATCCATTGATGCTTTACGGGCGCTTCAGAG
CGTTATCGATACCGGTAGCATGACGCGTGCGGCGCAACAGCTAAATCTCAGCCAGTCGGCGGTAAGTTGGAAAATCAAAC
GGCTGGAGGAACAGTTGGGGCGCACGCTGGTCAATCGTCAGGGCATGACGTTGACTGCCACAGCGGATGGCGAGGCACTG
TTGTCGCATGGACGGCAGATTCTGCAGGCTCACGATCGGGCACTGGCGCATTTTTCTCCTTCATTATTGCAGGGTAAGGT
GCGTTTTGGTGCCACGGAACAGATGTCTTTACCTCAGTTGGCTGCCTTGCTGGCGGCATTCACCCACCAACACCCACAGG
TGGATGTGCAACTGGTCATTGAGCAAAGCCAGGTGTTGCGTAATGCACTGGAGCAAGGAGCGCTGGATCTGGTGCTACAC
CAACAGTTTTGCGATACGCTGAGCGCAGAAGATGTGGTGCTGGCAACGGAGCGTATTCACTGGTGTGTACCACCGGGTTG
GCGCTATCAGCCCGGAGACAGGGTGAAACTGGTCAGTTACGGACCGGACTGTTTTTACCGCCGCCTGGCGCAAGAGCGCC
TGAGCGCCGCGGGTATTGCCTGTCAGGTGTCGGTGGAGTGCCCGTCGGTGGCGGGGATGCTGGCGGCCATCTCTGCAGGA
ATGGGCATTGGTCTGCTCAATCAGCAGTCTGTCGATCAGCGAGTACAGATCGAGGCCAACTTTGAACGCAGTCTGCCTTT
GCCACCCGTGGCGCATGCGTTACGTCTGGGGGCCAGGCGGCACCACCCAATACTGCAAACCTTGCAGCAGCAGGTGGTGC
AGGTTTTGGGTAAATCTGCCGTTACCTGA

Upstream 100 bases:

>100_bases
CTGATTAAGCACAGATGTTAAGCCGTTCATGTTGATTATCCGGTTGCCGTGTTGTACGCAAACCATACTCATCGTCTTCC
TATGACGCCAATGACAAGTT

Downstream 100 bases:

>100_bases
GCAACGGCGGATGGAGCTAAGCGCGGCGCGGGTTAGTCAGGCCGAAGTTAAAGTTATTGCAGCGGTTGCAGAACTCCTTC
ATCACCGGCGGTGTGTCCAT

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: 2,2-dialkylglycine decarboxylase repressor [H]

Number of amino acids: Translated: 302; Mature: 302

Protein sequence:

>302_residues
MVSKSDFCHEVSMNQRLSIDALRALQSVIDTGSMTRAAQQLNLSQSAVSWKIKRLEEQLGRTLVNRQGMTLTATADGEAL
LSHGRQILQAHDRALAHFSPSLLQGKVRFGATEQMSLPQLAALLAAFTHQHPQVDVQLVIEQSQVLRNALEQGALDLVLH
QQFCDTLSAEDVVLATERIHWCVPPGWRYQPGDRVKLVSYGPDCFYRRLAQERLSAAGIACQVSVECPSVAGMLAAISAG
MGIGLLNQQSVDQRVQIEANFERSLPLPPVAHALRLGARRHHPILQTLQQQVVQVLGKSAVT

Sequences:

>Translated_302_residues
MVSKSDFCHEVSMNQRLSIDALRALQSVIDTGSMTRAAQQLNLSQSAVSWKIKRLEEQLGRTLVNRQGMTLTATADGEAL
LSHGRQILQAHDRALAHFSPSLLQGKVRFGATEQMSLPQLAALLAAFTHQHPQVDVQLVIEQSQVLRNALEQGALDLVLH
QQFCDTLSAEDVVLATERIHWCVPPGWRYQPGDRVKLVSYGPDCFYRRLAQERLSAAGIACQVSVECPSVAGMLAAISAG
MGIGLLNQQSVDQRVQIEANFERSLPLPPVAHALRLGARRHHPILQTLQQQVVQVLGKSAVT
>Mature_302_residues
MVSKSDFCHEVSMNQRLSIDALRALQSVIDTGSMTRAAQQLNLSQSAVSWKIKRLEEQLGRTLVNRQGMTLTATADGEAL
LSHGRQILQAHDRALAHFSPSLLQGKVRFGATEQMSLPQLAALLAAFTHQHPQVDVQLVIEQSQVLRNALEQGALDLVLH
QQFCDTLSAEDVVLATERIHWCVPPGWRYQPGDRVKLVSYGPDCFYRRLAQERLSAAGIACQVSVECPSVAGMLAAISAG
MGIGLLNQQSVDQRVQIEANFERSLPLPPVAHALRLGARRHHPILQTLQQQVVQVLGKSAVT

Specific function: Not Known, Does Not Seem To Act On The Proton Translocating NADH Dehydrogenase Genes (Nuoa-N) Which Are Part Of The Lrha Operon. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788626, Length=274, Percent_Identity=24.4525547445255, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI1787806, Length=252, Percent_Identity=25, Blast_Score=78, Evalue=8e-16,
Organism=Escherichia coli, GI1787601, Length=153, Percent_Identity=31.3725490196078, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1787589, Length=132, Percent_Identity=34.8484848484849, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1788297, Length=244, Percent_Identity=26.2295081967213, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1786401, Length=128, Percent_Identity=33.59375, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI157672245, Length=222, Percent_Identity=27.9279279279279, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI87082132, Length=241, Percent_Identity=21.9917012448133, Blast_Score=61, Evalue=9e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33139; Mature: 33139

Theoretical pI: Translated: 8.17; Mature: 8.17

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVSKSDFCHEVSMNQRLSIDALRALQSVIDTGSMTRAAQQLNLSQSAVSWKIKRLEEQLG
CCCCCHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHH
RTLVNRQGMTLTATADGEALLSHGRQILQAHDRALAHFSPSLLQGKVRFGATEQMSLPQL
HHHHCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHCCHHHHHCHHHCCCCCCCCHHHH
AALLAAFTHQHPQVDVQLVIEQSQVLRNALEQGALDLVLHQQFCDTLSAEDVVLATERIH
HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCEEEEECCEE
WCVPPGWRYQPGDRVKLVSYGPDCFYRRLAQERLSAAGIACQVSVECPSVAGMLAAISAG
EECCCCCCCCCCCCEEEEEECHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHC
MGIGLLNQQSVDQRVQIEANFERSLPLPPVAHALRLGARRHHPILQTLQQQVVQVLGKSA
CCCCCCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHC
VT
CC
>Mature Secondary Structure
MVSKSDFCHEVSMNQRLSIDALRALQSVIDTGSMTRAAQQLNLSQSAVSWKIKRLEEQLG
CCCCCHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHH
RTLVNRQGMTLTATADGEALLSHGRQILQAHDRALAHFSPSLLQGKVRFGATEQMSLPQL
HHHHCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHCCHHHHHCHHHCCCCCCCCHHHH
AALLAAFTHQHPQVDVQLVIEQSQVLRNALEQGALDLVLHQQFCDTLSAEDVVLATERIH
HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCEEEEECCEE
WCVPPGWRYQPGDRVKLVSYGPDCFYRRLAQERLSAAGIACQVSVECPSVAGMLAAISAG
EECCCCCCCCCCCCEEEEEECHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHC
MGIGLLNQQSVDQRVQIEANFERSLPLPPVAHALRLGARRHHPILQTLQQQVVQVLGKSA
CCCCCCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHC
VT
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2180928 [H]