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The map label for this gene is yodB [H]

Identifier: 157369217

GI number: 157369217

Start: 1069458

End: 1069982

Strand: Reverse

Name: yodB [H]

Synonym: Spro_0972

Alternate gene names: 157369217

Gene position: 1069982-1069458 (Counterclockwise)

Preceding gene: 157369218

Following gene: 157369216

Centisome position: 19.64

GC content: 57.9

Gene sequence:

>525_bases
ATGCCGATGCAGATCCGTCTGCACTGGCTGGTGGCGATCCTGTTGATCATCACTTGCACGACGATTGAGCTAAGAGGATT
TACCATACCGGGCACCCCGTTATGGTACGTGTTGGTGGTGACCCACTTCAGCTGTGGGGTGACGGTTTTTGTATTGATGA
TCGCCCGTCTATTCCTGCGCTGGCGCCACACCAGCCCTGTCATCAGCCCGAAACCGGCTAAATGGCAAACCGGCGCGGCG
CATCTGGTGCACAGCCTGATTTATCTGTTGCTGCTGACGCTGCCAGTGTTGGGGGTTTATTCCCGCTATCTGGGCGGTAA
AGAGTGGTTTCTGTTTGGCCTGCCGATGCCCTTTGCCGAGGTCGCCGATCGGCCGCAGGCGCGGATGATTATCGGCTGGC
ACAAGACGCTGGCGGCCTTCGGTTATTGGCTGATTGGGCTGCATGCCGCCGCCGCGCTGTTCCATCACTATATCGTTAAG
GACAACGCGCTGGTGCGCATGCTGCCGTGGCTGAAAAAGCCTTAG

Upstream 100 bases:

>100_bases
ATGATTTTCACATCCGGCGCTTTCCTCCTCTGTAACATTTGGTTACTCTCATCAGCACTGTGATTTAACATTCAAAGGCA
ACCCGGTGCAGAACTCTTAT

Downstream 100 bases:

>100_bases
CTATAGGTGACAATACCAACAGTATAATAATAAGCATGTATATATAAGCCAATAGATATAATCCATTGGCTTATTATTCT
TATAGTTTATGGCGGTTAAA

Product: cytochrome B561

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 174; Mature: 173

Protein sequence:

>174_residues
MPMQIRLHWLVAILLIITCTTIELRGFTIPGTPLWYVLVVTHFSCGVTVFVLMIARLFLRWRHTSPVISPKPAKWQTGAA
HLVHSLIYLLLLTLPVLGVYSRYLGGKEWFLFGLPMPFAEVADRPQARMIIGWHKTLAAFGYWLIGLHAAAALFHHYIVK
DNALVRMLPWLKKP

Sequences:

>Translated_174_residues
MPMQIRLHWLVAILLIITCTTIELRGFTIPGTPLWYVLVVTHFSCGVTVFVLMIARLFLRWRHTSPVISPKPAKWQTGAA
HLVHSLIYLLLLTLPVLGVYSRYLGGKEWFLFGLPMPFAEVADRPQARMIIGWHKTLAAFGYWLIGLHAAAALFHHYIVK
DNALVRMLPWLKKP
>Mature_173_residues
PMQIRLHWLVAILLIITCTTIELRGFTIPGTPLWYVLVVTHFSCGVTVFVLMIARLFLRWRHTSPVISPKPAKWQTGAAH
LVHSLIYLLLLTLPVLGVYSRYLGGKEWFLFGLPMPFAEVADRPQARMIIGWHKTLAAFGYWLIGLHAAAALFHHYIVKD
NALVRMLPWLKKP

Specific function: Unknown

COG id: COG3038

COG function: function code C; Cytochrome B561

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome b561 family [H]

Homologues:

Organism=Escherichia coli, GI87082013, Length=170, Percent_Identity=41.7647058823529, Blast_Score=131, Evalue=3e-32,
Organism=Escherichia coli, GI87081903, Length=168, Percent_Identity=48.2142857142857, Blast_Score=103, Evalue=5e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005797
- InterPro:   IPR016174 [H]

Pfam domain/function: PF00033 Cytochrom_B_N [H]

EC number: NA

Molecular weight: Translated: 19892; Mature: 19761

Theoretical pI: Translated: 10.70; Mature: 10.70

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPMQIRLHWLVAILLIITCTTIELRGFTIPGTPLWYVLVVTHFSCGVTVFVLMIARLFLR
CCCEEHHHHHHHHHHHHHHHHEEEECEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
WRHTSPVISPKPAKWQTGAAHLVHSLIYLLLLTLPVLGVYSRYLGGKEWFLFGLPMPFAE
HHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHH
VADRPQARMIIGWHKTLAAFGYWLIGLHAAAALFHHYIVKDNALVRMLPWLKKP
HCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCC
>Mature Secondary Structure 
PMQIRLHWLVAILLIITCTTIELRGFTIPGTPLWYVLVVTHFSCGVTVFVLMIARLFLR
CCEEHHHHHHHHHHHHHHHHEEEECEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
WRHTSPVISPKPAKWQTGAAHLVHSLIYLLLLTLPVLGVYSRYLGGKEWFLFGLPMPFAE
HHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHH
VADRPQARMIIGWHKTLAAFGYWLIGLHAAAALFHHYIVKDNALVRMLPWLKKP
HCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9097040; 9278503 [H]