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The map label for this gene is yafK [H]

Identifier: 157369197

GI number: 157369197

Start: 1049972

End: 1050742

Strand: Reverse

Name: yafK [H]

Synonym: Spro_0952

Alternate gene names: 157369197

Gene position: 1050742-1049972 (Counterclockwise)

Preceding gene: 157369206

Following gene: 157369194

Centisome position: 19.28

GC content: 51.49

Gene sequence:

>771_bases
ATGAGCAAAATCGCGTTGTTGTTTGCGATGCTTTTTTCTATGCCGATGATCACGGCCTGCAGCGCCAGCGAGCAGGTTCC
CGAGGTTCCGGTAGTTAAGCAGCAATTAGTAGGGTCACCGGTCTATATTCAGATCTTCAAAGAGGAACGCACGCTGGAAT
TGTATGCCAAAATGGGCAACGAATTCCGTCTGGTGAACTCTTTCCAAATCTGTAATTTCTCCGGCGGCCTCGGCCCGAAA
CGCCGTGAAGGTGACTTTAAGAGTCCGGAAGGCTTTTATAGCGTCGACGCGCGTCATCTGAAACCCGACAGCAAGTATTA
TCGAGCCATCAATATCGGCTTCCCGAATGATTACGATAAATCACAGGGTTATTCCGGCGCTTATCTGATGATCCACGGTG
AATGTAAATCTATTGGGTGTTATGCAATGACCAACACCTATATGGATGAGATTTATCGCTACGTCGAAGCCGCGTTTGCT
TACGGCCAGAGCCGGATTGATATCAGTATCTATCCGTTCCGCATGACCGACAAGAACCTGAAACGTCACAGCTCATCGAG
CTACATCGCCTTCTGGCGCCAGCTGAAGCCGGGCTATGACTACTTCGTCAAAAATCACCAGCCGCCGATGGTCAGCGTAG
CCAATGGCCAGTACGTGTTGGGCCAGCCCGTGCTGAGCAGCGGCCAGATGACGCAGTATGCGTCAACCACGGCTCCCACT
GTCAGTACCAATCCCTTCGCTCAGACCAAGCCGCTCACCGAAGTGAAATAG

Upstream 100 bases:

>100_bases
ACACTGGTAATCTGACGGTGTTTTAAGACCGTAAAACAATAATCAGTGGCATGTTGGCCAAGTGCATTGAGCCAGCAGAT
AAATATAAGCAGGAATAATA

Downstream 100 bases:

>100_bases
TGCGAATTCACCTGGCGCAATCTTGTGCCAGGTTTCATTCGCCGTCAGCGGCTGGGTAGCAATCACCGTGACCACATCGT
TAGGCGTGGTCTGCTGCTGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 256; Mature: 255

Protein sequence:

>256_residues
MSKIALLFAMLFSMPMITACSASEQVPEVPVVKQQLVGSPVYIQIFKEERTLELYAKMGNEFRLVNSFQICNFSGGLGPK
RREGDFKSPEGFYSVDARHLKPDSKYYRAINIGFPNDYDKSQGYSGAYLMIHGECKSIGCYAMTNTYMDEIYRYVEAAFA
YGQSRIDISIYPFRMTDKNLKRHSSSSYIAFWRQLKPGYDYFVKNHQPPMVSVANGQYVLGQPVLSSGQMTQYASTTAPT
VSTNPFAQTKPLTEVK

Sequences:

>Translated_256_residues
MSKIALLFAMLFSMPMITACSASEQVPEVPVVKQQLVGSPVYIQIFKEERTLELYAKMGNEFRLVNSFQICNFSGGLGPK
RREGDFKSPEGFYSVDARHLKPDSKYYRAINIGFPNDYDKSQGYSGAYLMIHGECKSIGCYAMTNTYMDEIYRYVEAAFA
YGQSRIDISIYPFRMTDKNLKRHSSSSYIAFWRQLKPGYDYFVKNHQPPMVSVANGQYVLGQPVLSSGQMTQYASTTAPT
VSTNPFAQTKPLTEVK
>Mature_255_residues
SKIALLFAMLFSMPMITACSASEQVPEVPVVKQQLVGSPVYIQIFKEERTLELYAKMGNEFRLVNSFQICNFSGGLGPKR
REGDFKSPEGFYSVDARHLKPDSKYYRAINIGFPNDYDKSQGYSGAYLMIHGECKSIGCYAMTNTYMDEIYRYVEAAFAY
GQSRIDISIYPFRMTDKNLKRHSSSSYIAFWRQLKPGYDYFVKNHQPPMVSVANGQYVLGQPVLSSGQMTQYASTTAPTV
STNPFAQTKPLTEVK

Specific function: Unknown

COG id: COG3034

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the YkuD family [H]

Homologues:

Organism=Escherichia coli, GI1786418, Length=240, Percent_Identity=58.75, Blast_Score=300, Evalue=5e-83,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005490 [H]

Pfam domain/function: PF03734 YkuD [H]

EC number: NA

Molecular weight: Translated: 28961; Mature: 28830

Theoretical pI: Translated: 9.10; Mature: 9.10

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
5.9 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
5.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKIALLFAMLFSMPMITACSASEQVPEVPVVKQQLVGSPVYIQIFKEERTLELYAKMGN
CCHHHHHHHHHHHCHHHEECCCCCCCCCCCHHHHHHCCCCEEEEEECCCCHHHHHHHCCC
EFRLVNSFQICNFSGGLGPKRREGDFKSPEGFYSVDARHLKPDSKYYRAINIGFPNDYDK
EEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCEECCHHHCCCCCCEEEEEECCCCCCCCC
SQGYSGAYLMIHGECKSIGCYAMTNTYMDEIYRYVEAAFAYGQSRIDISIYPFRMTDKNL
CCCCCCEEEEEECCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEEECCHHH
KRHSSSSYIAFWRQLKPGYDYFVKNHQPPMVSVANGQYVLGQPVLSSGQMTQYASTTAPT
HHCCCCCHHHHHHHCCCCCCEEECCCCCCEEEECCCCEEECCCCCCCCCCEEECCCCCCC
VSTNPFAQTKPLTEVK
CCCCCCCCCCCCCCCC
>Mature Secondary Structure 
SKIALLFAMLFSMPMITACSASEQVPEVPVVKQQLVGSPVYIQIFKEERTLELYAKMGN
CHHHHHHHHHHHCHHHEECCCCCCCCCCCHHHHHHCCCCEEEEEECCCCHHHHHHHCCC
EFRLVNSFQICNFSGGLGPKRREGDFKSPEGFYSVDARHLKPDSKYYRAINIGFPNDYDK
EEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCEECCHHHCCCCCCEEEEEECCCCCCCCC
SQGYSGAYLMIHGECKSIGCYAMTNTYMDEIYRYVEAAFAYGQSRIDISIYPFRMTDKNL
CCCCCCEEEEEECCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEEECCHHH
KRHSSSSYIAFWRQLKPGYDYFVKNHQPPMVSVANGQYVLGQPVLSSGQMTQYASTTAPT
HHCCCCCHHHHHHHCCCCCCEEECCCCCCEEEECCCCEEECCCCCCCCCCEEECCCCCCC
VSTNPFAQTKPLTEVK
CCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]