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The map label for this gene is yafD [C]

Identifier: 157369152

GI number: 157369152

Start: 1006557

End: 1007330

Strand: Direct

Name: yafD [C]

Synonym: Spro_0907

Alternate gene names: 157369152

Gene position: 1006557-1007330 (Clockwise)

Preceding gene: 157369151

Following gene: 157369155

Centisome position: 18.47

GC content: 56.59

Gene sequence:

>774_bases
ATGAGGTATGTTGCAGGTCAGCCAGTTGAGCGAATTTTCCCTGGCGCCATCAACCAACCGCTGCCGCCTGGGGCTGCATT
GCCCACGTCCGGTGCATTACGGGTGATGGTGTGGAACATCTTTAAACAGCAGCGGGCCGATTGGCTTTCGGTGCTGAAAA
GTTATGGCAAGGATGCGCAACTGGTGCTGTTGCAGGAGGCGCAAACCACGCCTGAGCTGGTGAGCTTTGCCACGTCAAAC
TATCTGGCTGCCGATCAGGTGCCGGCATTCGTGTTGCCTCAGCATCCTTCCGGCGTAATGACGCTGGCGGCGGCGCATCC
GGTCTATTGCTGCCCACTGCGTGAACGTGAGCCATTGCTGCGGCTGGCCAAGTCGGCGCTGATTACCGTCTACCCGTTGT
TTAACGGCCAGCTATTGATGGTGGTGAATATCCATGCGGTGAATTTCAGCCTGGGCGTGGATGTCTACAGTAAGCAACTG
GGACCAATTGGTGAGCAGATTGCCAATCACCAGGGGCCGGTGATCATGGCCGGGGATTTTAATGCCTGGAGTCGTAAGCG
AATTAATGCGCTATACCAGTTTGCCAGTGATATGGCGCTGCGTGAGGTGAACTTTACCGACGATCACCGCCGCAAGGCGT
TTGGCCGCCCGCTGGACTTTGTGTTTTATCGCAACATGGGGGTGGCAGAGGCTTCGGTGCTGGTGACCAGCGCATCGGAT
CATAATCCGCTGCTGGTGGAGTTTCACCCTGAAGCCGACAAGCCGCATTGGTAA

Upstream 100 bases:

>100_bases
GAGGGCAGGCGTATAATCAATTCATTGTTGGCGGGAATGTCACTGCCAGTTTTATCCTAATGGGAAATAGGCGAATAGCG
TGCCGAAACGAACTTATGCA

Downstream 100 bases:

>100_bases
CATTCGCACCATATTCAGACAAATAAAAAAGCACCCCGAAGGGTGCTTTTTTTGTGCCGAAAATTTAGGTATCCGGCGAC
GTTTTATCGCTGACAAACAG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 257; Mature: 257

Protein sequence:

>257_residues
MRYVAGQPVERIFPGAINQPLPPGAALPTSGALRVMVWNIFKQQRADWLSVLKSYGKDAQLVLLQEAQTTPELVSFATSN
YLAADQVPAFVLPQHPSGVMTLAAAHPVYCCPLREREPLLRLAKSALITVYPLFNGQLLMVVNIHAVNFSLGVDVYSKQL
GPIGEQIANHQGPVIMAGDFNAWSRKRINALYQFASDMALREVNFTDDHRRKAFGRPLDFVFYRNMGVAEASVLVTSASD
HNPLLVEFHPEADKPHW

Sequences:

>Translated_257_residues
MRYVAGQPVERIFPGAINQPLPPGAALPTSGALRVMVWNIFKQQRADWLSVLKSYGKDAQLVLLQEAQTTPELVSFATSN
YLAADQVPAFVLPQHPSGVMTLAAAHPVYCCPLREREPLLRLAKSALITVYPLFNGQLLMVVNIHAVNFSLGVDVYSKQL
GPIGEQIANHQGPVIMAGDFNAWSRKRINALYQFASDMALREVNFTDDHRRKAFGRPLDFVFYRNMGVAEASVLVTSASD
HNPLLVEFHPEADKPHW
>Mature_257_residues
MRYVAGQPVERIFPGAINQPLPPGAALPTSGALRVMVWNIFKQQRADWLSVLKSYGKDAQLVLLQEAQTTPELVSFATSN
YLAADQVPAFVLPQHPSGVMTLAAAHPVYCCPLREREPLLRLAKSALITVYPLFNGQLLMVVNIHAVNFSLGVDVYSKQL
GPIGEQIANHQGPVIMAGDFNAWSRKRINALYQFASDMALREVNFTDDHRRKAFGRPLDFVFYRNMGVAEASVLVTSASD
HNPLLVEFHPEADKPHW

Specific function: Unknown

COG id: COG3021

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0294 family [H]

Homologues:

Organism=Escherichia coli, GI1786403, Length=254, Percent_Identity=79.5275590551181, Blast_Score=421, Evalue=1e-119,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005135
- InterPro:   IPR022958 [H]

Pfam domain/function: PF03372 Exo_endo_phos [H]

EC number: NA

Molecular weight: Translated: 28532; Mature: 28532

Theoretical pI: Translated: 8.24; Mature: 8.24

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRYVAGQPVERIFPGAINQPLPPGAALPTSGALRVMVWNIFKQQRADWLSVLKSYGKDAQ
CCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEE
LVLLQEAQTTPELVSFATSNYLAADQVPAFVLPQHPSGVMTLAAAHPVYCCPLREREPLL
EEEEECCCCCHHHHHHHHCCCEECCCCCEEEECCCCCCEEEEEECCCEEECCCCCCCHHH
RLAKSALITVYPLFNGQLLMVVNIHAVNFSLGVDVYSKQLGPIGEQIANHQGPVIMAGDF
HHHHHHEEEEEEECCCCEEEEEEEEEEEEEECCHHHHHHCCCHHHHHHCCCCCEEEEECC
NAWSRKRINALYQFASDMALREVNFTDDHRRKAFGRPLDFVFYRNMGVAEASVLVTSASD
CHHHHHHHHHHHHHHHHHHEEECCCCCHHHHHHHCCCEEEEEECCCCCCEEEEEEEECCC
HNPLLVEFHPEADKPHW
CCCEEEEECCCCCCCCC
>Mature Secondary Structure
MRYVAGQPVERIFPGAINQPLPPGAALPTSGALRVMVWNIFKQQRADWLSVLKSYGKDAQ
CCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEE
LVLLQEAQTTPELVSFATSNYLAADQVPAFVLPQHPSGVMTLAAAHPVYCCPLREREPLL
EEEEECCCCCHHHHHHHHCCCEECCCCCEEEECCCCCCEEEEEECCCEEECCCCCCCHHH
RLAKSALITVYPLFNGQLLMVVNIHAVNFSLGVDVYSKQLGPIGEQIANHQGPVIMAGDF
HHHHHHEEEEEEECCCCEEEEEEEEEEEEEECCHHHHHHCCCHHHHHHCCCCCEEEEECC
NAWSRKRINALYQFASDMALREVNFTDDHRRKAFGRPLDFVFYRNMGVAEASVLVTSASD
CHHHHHHHHHHHHHHHHHHEEECCCCCHHHHHHHCCCEEEEEECCCCCCEEEEEEEECCC
HNPLLVEFHPEADKPHW
CCCEEEEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA