Click here to switch to the map view.

The map label for this gene is ytbD [H]

Identifier: 157369151

GI number: 157369151

Start: 1005118

End: 1006293

Strand: Direct

Name: ytbD [H]

Synonym: Spro_0906

Alternate gene names: 157369151

Gene position: 1005118-1006293 (Clockwise)

Preceding gene: 157369149

Following gene: 157369152

Centisome position: 18.45

GC content: 55.7

Gene sequence:

>1176_bases
ATGCCTCTCGCATTACTTGCATTGACCATTAGTGCCTTTGCTATCGGCACCACGGAGTTTGTGATTGTCGGACTTATCCC
GACTATCGCAGAACAGTTGGGGGTGACAGTGCCGTCAGCCGGGCTGCTGGTAACCATTTACGCTATCGGCGTGGCTATTG
GTGCACCGGTGCTGACAGCCTTAACCGGTCGCGTGCCGCGCAAGTTGTTGCTGATCAGCCTGATGGTGCTGTTCACTCTC
GGTAACTTATTGGCCTGGCAGTCGCCTGGCTATGGGACGCTGGTGGTGGCCCGCTTGTTGACCGGCCTGGCCCACGGGGT
CTTCTTCTCAATCGGTTCGACTATTGCTACCGGCCTGGTCGCGAAAGAGAAGGCCGCCTCGGCGATCGCCATCATGTTTG
GTGGCCTGACCGTGGCGCTGGTGACAGGGGTGCCATTGGGGACCTTTATCGGTCAGCACTTTGGCTGGCGTGAAACCTTC
CTGGCAGTATCACTGATTGGTGTAATAGCCACCGTAGCCAGCGCTATTTTGGTGCCAAACAACATTAAAAATCAGGCCAG
CGCCAGTATTAAGGAACAGTTTAAAGTGCTGACCCATCCTCGCCTGTTGCTGATTTACGCCATTACTGCACTGGGTTACG
GCGGCGTGTTCACGACTTTCACCTTCCTGGCTCCGATGATGCAGGAGTTGGCGGGCTTTTCTGCTCCGGCAGTCAGCTGG
ATCCTGCTGGCCTACGGCATTGCGGTGGCGATAGGTAACATCTGGGGGGGCAAACTGGCGGATCGTCACGGGGCGGTACG
CGCACTCAGCTTTATTTTTGCCGTGCTGGCCGTTCTGCTGCTGGTGTTCCAATTCACCGCCAGCCACAGCATTGCCGCGT
TGCTGACGGTGATCGTCATGGGAGTGTTTGCCTTTGGTAATGTTCCGGGGCTGCAGGTGTATGTGGTACAGAAAGCCGAA
CAATACACGCCGAACGCGGTGGATGTGGCCTCCGGCCTGAACATTGCGGCTTTTAACGTAGGTATTGCCCTTGGTTCGGT
GATTGGTGGGCAAACGGTAGCCACTTTGGGGTTGGCACAAACTCCGTGGATTGGTGCTTTGATCGTGCTGGTGGCTCTAT
TATTGGTTAGCCTAAGTGGACGTTTGGATAAGAAATATCGGCCGCAATTAGCCTAA

Upstream 100 bases:

>100_bases
CTCCATTGGCAAAATTAATTTGATATTTTGAGCATTTTTATCATTTAAGCACGGGTCGATAATAGCCGCCATCAACCTGA
ATGCTATTTGGAGTAAAAAG

Downstream 100 bases:

>100_bases
ACCTCCTCACGCTCTCTTCTCTGGCCCGCATTTTGCGGGCCTTTTCGCATTTATGATACGCCGCCGCCAACCTTTACACA
CATATACTGTCAGAAGATTG

Product: major facilitator transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 391; Mature: 390

Protein sequence:

>391_residues
MPLALLALTISAFAIGTTEFVIVGLIPTIAEQLGVTVPSAGLLVTIYAIGVAIGAPVLTALTGRVPRKLLLISLMVLFTL
GNLLAWQSPGYGTLVVARLLTGLAHGVFFSIGSTIATGLVAKEKAASAIAIMFGGLTVALVTGVPLGTFIGQHFGWRETF
LAVSLIGVIATVASAILVPNNIKNQASASIKEQFKVLTHPRLLLIYAITALGYGGVFTTFTFLAPMMQELAGFSAPAVSW
ILLAYGIAVAIGNIWGGKLADRHGAVRALSFIFAVLAVLLLVFQFTASHSIAALLTVIVMGVFAFGNVPGLQVYVVQKAE
QYTPNAVDVASGLNIAAFNVGIALGSVIGGQTVATLGLAQTPWIGALIVLVALLLVSLSGRLDKKYRPQLA

Sequences:

>Translated_391_residues
MPLALLALTISAFAIGTTEFVIVGLIPTIAEQLGVTVPSAGLLVTIYAIGVAIGAPVLTALTGRVPRKLLLISLMVLFTL
GNLLAWQSPGYGTLVVARLLTGLAHGVFFSIGSTIATGLVAKEKAASAIAIMFGGLTVALVTGVPLGTFIGQHFGWRETF
LAVSLIGVIATVASAILVPNNIKNQASASIKEQFKVLTHPRLLLIYAITALGYGGVFTTFTFLAPMMQELAGFSAPAVSW
ILLAYGIAVAIGNIWGGKLADRHGAVRALSFIFAVLAVLLLVFQFTASHSIAALLTVIVMGVFAFGNVPGLQVYVVQKAE
QYTPNAVDVASGLNIAAFNVGIALGSVIGGQTVATLGLAQTPWIGALIVLVALLLVSLSGRLDKKYRPQLA
>Mature_390_residues
PLALLALTISAFAIGTTEFVIVGLIPTIAEQLGVTVPSAGLLVTIYAIGVAIGAPVLTALTGRVPRKLLLISLMVLFTLG
NLLAWQSPGYGTLVVARLLTGLAHGVFFSIGSTIATGLVAKEKAASAIAIMFGGLTVALVTGVPLGTFIGQHFGWRETFL
AVSLIGVIATVASAILVPNNIKNQASASIKEQFKVLTHPRLLLIYAITALGYGGVFTTFTFLAPMMQELAGFSAPAVSWI
LLAYGIAVAIGNIWGGKLADRHGAVRALSFIFAVLAVLLLVFQFTASHSIAALLTVIVMGVFAFGNVPGLQVYVVQKAEQ
YTPNAVDVASGLNIAAFNVGIALGSVIGGQTVATLGLAQTPWIGALIVLVALLLVSLSGRLDKKYRPQLA

Specific function: Unknown

COG id: COG2814

COG function: function code G; Arabinose efflux permease

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the major facilitator superfamily [H]

Homologues:

Organism=Escherichia coli, GI1787947, Length=384, Percent_Identity=40.8854166666667, Blast_Score=235, Evalue=4e-63,
Organism=Escherichia coli, GI1786595, Length=391, Percent_Identity=32.4808184143223, Blast_Score=198, Evalue=5e-52,
Organism=Escherichia coli, GI1787808, Length=375, Percent_Identity=31.7333333333333, Blast_Score=144, Evalue=8e-36,
Organism=Escherichia coli, GI145693198, Length=369, Percent_Identity=27.3712737127371, Blast_Score=116, Evalue=3e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020846
- InterPro:   IPR011701
- InterPro:   IPR016196 [H]

Pfam domain/function: PF07690 MFS_1 [H]

EC number: NA

Molecular weight: Translated: 40500; Mature: 40369

Theoretical pI: Translated: 10.37; Mature: 10.37

Prosite motif: PS50850 MFS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPLALLALTISAFAIGTTEFVIVGLIPTIAEQLGVTVPSAGLLVTIYAIGVAIGAPVLTA
CCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHH
LTGRVPRKLLLISLMVLFTLGNLLAWQSPGYGTLVVARLLTGLAHGVFFSIGSTIATGLV
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AKEKAASAIAIMFGGLTVALVTGVPLGTFIGQHFGWRETFLAVSLIGVIATVASAILVPN
HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCC
NIKNQASASIKEQFKVLTHPRLLLIYAITALGYGGVFTTFTFLAPMMQELAGFSAPAVSW
CCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHH
ILLAYGIAVAIGNIWGGKLADRHGAVRALSFIFAVLAVLLLVFQFTASHSIAALLTVIVM
HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
GVFAFGNVPGLQVYVVQKAEQYTPNAVDVASGLNIAAFNVGIALGSVIGGQTVATLGLAQ
HHHHHCCCCCEEEEEEECHHHCCCCHHHHHCCCCEEHHHHHHHHHHHHCCCHHHHHCCCC
TPWIGALIVLVALLLVSLSGRLDKKYRPQLA
CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
>Mature Secondary Structure 
PLALLALTISAFAIGTTEFVIVGLIPTIAEQLGVTVPSAGLLVTIYAIGVAIGAPVLTA
CHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHH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CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9387221; 9384377 [H]