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The map label for this gene is tfaD [H]

Identifier: 157369109

GI number: 157369109

Start: 958660

End: 959214

Strand: Reverse

Name: tfaD [H]

Synonym: Spro_0864

Alternate gene names: 157369109

Gene position: 959214-958660 (Counterclockwise)

Preceding gene: 157369110

Following gene: 157369108

Centisome position: 17.6

GC content: 44.68

Gene sequence:

>555_bases
ATGAAGAACATAAAAAACTTCACTCTGACTGAGCCTGAAAGTTCAGAGCAAAAGTTACTGGCTGCCTCGCATGGTGTTTT
ATTTTTAAAGTCTGACAGCGGCGATGATTGGTATGAATGCCAAAAGACATTTCGCAATGACACAATCAAGATAATGTATG
ATCTGAATGGTATCATTCGCTCAATCTCCAACAAACCGAATGCTGATGGGCATTTTGATGCATCTGGTTTTTTCCCGGAA
AACATGAGCGTTGCCGAAATAGAGCAACTTCCTGAACATGCTGATATTGATGGTCGCTGGTTTTTTGACGGAACACAGAT
TAAGCCTCGCACGTATTCAGTTGCGGAATTACAGCAGCAAGCGATGAATAAAAAACAGGACTTGAGTAAACAGGCTTCAC
TGAAAATTGCAACGCTCAACGACGCCGTCGAGTTAGAAATGGCAAGTGAAGAGGAGCAAAAGCAATTAACCGCCTGGAAA
ACCTATCGCGTTTTGCTCAGCAGAGTCGATCCAGGCCTGGCCCCAGACATCGACTGGCCACAGCCGCCGCAATAA

Upstream 100 bases:

>100_bases
GCATCAAATTATAATATGGATGAGTACCTAGATCACATTTACCGTCGCCCGCTGCAAAAGCATATTAATGGTAACTGGGT
TACCGTATGGAGCGTTTAAA

Downstream 100 bases:

>100_bases
TCGCACCTTCAACGCCCCGCCCGGGGCGTTTTTTTTATCTTGGTTTTCCTGCTGTTGTATCAGTTCTCATACATACCCAA
TGAGATGCGCGGCCCCATCG

Product: tail assembly chaperone gp38

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 184; Mature: 184

Protein sequence:

>184_residues
MKNIKNFTLTEPESSEQKLLAASHGVLFLKSDSGDDWYECQKTFRNDTIKIMYDLNGIIRSISNKPNADGHFDASGFFPE
NMSVAEIEQLPEHADIDGRWFFDGTQIKPRTYSVAELQQQAMNKKQDLSKQASLKIATLNDAVELEMASEEEQKQLTAWK
TYRVLLSRVDPGLAPDIDWPQPPQ

Sequences:

>Translated_184_residues
MKNIKNFTLTEPESSEQKLLAASHGVLFLKSDSGDDWYECQKTFRNDTIKIMYDLNGIIRSISNKPNADGHFDASGFFPE
NMSVAEIEQLPEHADIDGRWFFDGTQIKPRTYSVAELQQQAMNKKQDLSKQASLKIATLNDAVELEMASEEEQKQLTAWK
TYRVLLSRVDPGLAPDIDWPQPPQ
>Mature_184_residues
MKNIKNFTLTEPESSEQKLLAASHGVLFLKSDSGDDWYECQKTFRNDTIKIMYDLNGIIRSISNKPNADGHFDASGFFPE
NMSVAEIEQLPEHADIDGRWFFDGTQIKPRTYSVAELQQQAMNKKQDLSKQASLKIATLNDAVELEMASEEEQKQLTAWK
TYRVLLSRVDPGLAPDIDWPQPPQ

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To phage lambda terminase large subunit in the N- terminal section [H]

Homologues:

Organism=Escherichia coli, GI2367120, Length=65, Percent_Identity=52.3076923076923, Blast_Score=64, Evalue=5e-12,
Organism=Escherichia coli, GI1787637, Length=65, Percent_Identity=52.3076923076923, Blast_Score=64, Evalue=5e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003458
- InterPro:   IPR008866 [H]

Pfam domain/function: PF02413 Caudo_TAP; PF05876 Terminase_GpA [H]

EC number: NA

Molecular weight: Translated: 20924; Mature: 20924

Theoretical pI: Translated: 4.59; Mature: 4.59

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNIKNFTLTEPESSEQKLLAASHGVLFLKSDSGDDWYECQKTFRNDTIKIMYDLNGIIR
CCCCCCCEECCCCCCHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCEEEEEECHHHHHH
SISNKPNADGHFDASGFFPENMSVAEIEQLPEHADIDGRWFFDGTQIKPRTYSVAELQQQ
HHCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCEEEECCCEECCCCCHHHHHHHH
AMNKKQDLSKQASLKIATLNDAVELEMASEEEQKQLTAWKTYRVLLSRVDPGLAPDIDWP
HHHHHHHCHHHHCEEEEECCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
QPPQ
CCCC
>Mature Secondary Structure
MKNIKNFTLTEPESSEQKLLAASHGVLFLKSDSGDDWYECQKTFRNDTIKIMYDLNGIIR
CCCCCCCEECCCCCCHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCEEEEEECHHHHHH
SISNKPNADGHFDASGFFPENMSVAEIEQLPEHADIDGRWFFDGTQIKPRTYSVAELQQQ
HHCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCEEEECCCEECCCCCHHHHHHHH
AMNKKQDLSKQASLKIATLNDAVELEMASEEEQKQLTAWKTYRVLLSRVDPGLAPDIDWP
HHHHHHHCHHHHCEEEEECCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
QPPQ
CCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]